Discovery of Binding Motif Pairs from Protein Complex Structural Data and Protein Interaction Sequence Data. - Haiquan Li; Jinyan Li 001; Soon-Heng Tan; See-Kiong Ng (Pacific Symposium on Biocomputing, 2004)

Self-organization Evolution of Supply Networks: System Modeling and Simulation Based on Multi-agent. - Gang Li 019; Linyan Sun; Ping Ji 001; Haiquan Li (CIS (1), 2005)

A Correspondence Between Maximal Complete Bipartite Subgraphs and Closed Patterns. - Jinyan Li 001; Haiquan Li; Donny Soh; Limsoon Wong (PKDD, 2005)

Relative risk and odds ratio: a data mining perspective. - Haiquan Li; Jinyan Li 001; Limsoon Wong; Mengling Feng; Yap-Peng Tan (PODS, 2005)

Discovery of stable and significant binding motif pairs from PDB complexes and protein interaction datasets. - Haiquan Li; Jinyan Li 001 (Bioinform., 2005)

Using Fixed Point Theorems to Model the Binding in Protein-Protein Interactions. - Jinyan Li 001; Haiquan Li (IEEE Trans. Knowl. Data Eng., 2005)

Minimum Description Length Principle: Generators Are Preferable to Closed Patterns. - Jinyan Li 001; Haiquan Li; Limsoon Wong; Jian Pei 001; Guozhu Dong (AAAI, 2006)

Discovering motif pairs at interaction sites from protein sequences on a proteome-wide scale. - Haiquan Li; Jinyan Li 001; Limsoon Wong (Bioinform., 2006)

Maximal Biclique Subgraphs and Closed Pattern Pairs of the Adjacency Matrix: A One-to-One Correspondence and Mining Algorithms. - Jinyan Li 001; Guimei Liu; Haiquan Li; Limsoon Wong (IEEE Trans. Knowl. Data Eng., 2007)

Development on the Partial Discharge On-Line Monitoring System of Transformer Based on Embedded System. - Dening Zhang; Shuguang Zhang; Xuesong Suo; Man Cheng; Hong Juan Kou; Xiang Ling Shi; Su Zhang; Haiquan Li (IIH-MSP, 2008)

A nearest neighbor approach for automated transporter prediction and categorization from protein sequences. - Haiquan Li; Xinbin Dai; Xuechun Zhao (Bioinform., 2008)

TransportTP: A two-phase classification approach for membrane transporter prediction and characterization. - Haiquan Li; Vagner A. Benedito; Michael K. Udvardi; Patrick Xuechun Zhao (BMC Bioinform., 2009)

Discovery of Protein Interaction Sites. - Haiquan Li; Jinyan Li 001; Xuechun Zhao (Encyclopedia of Data Warehousing and Mining, 2009)

Towards Mechanism Classifiers: Expression-anchored Gene Ontology Signature Predicts Clinical Outcome in Lung Adenocarcinoma Patients. - Xinan Yang; Haiquan Li; Kelly Regan; Jianrong Li; Yong Huang; H. Rosie Xing; Yves A. Lussier (AMIA, 2012)

Complex-disease networks of trait-associated single-nucleotide polymorphisms (SNPs) unveiled by information theory. - Haiquan Li; Younghee Lee; James L. Chen; Ellen Rebman; Jianrong Li; Yves A. Lussier (J. Am. Medical Informatics Assoc., 2012)

Translating Mendelian and complex inheritance of Alzheimer's disease genes for predicting unique personal genome variants. - Kelly Regan; Kanix Wang; Emily Doughty; Haiquan Li; Jianrong Li; Younghee Lee; Maricel G. Kann; Yves A. Lussier (J. Am. Medical Informatics Assoc., 2012)

Breakthroughs in genomics data integration for predicting clinical outcome. - Yves A. Lussier; Haiquan Li (J. Biomed. Informatics, 2012)

Interpreting Personal Transcriptomes: Personalized Mechanism-Scale Profiling of RNA-seq Data. - Alan Perez-Rathke; Haiquan Li; Yves A. Lussier (Pacific Symposium on Biocomputing, 2013)

Research and applications: Network models of genome-wide association studies uncover the topological centrality of protein interactions in complex diseases. - Younghee Lee; Haiquan Li; Jianrong Li; Ellen Rebman; Ikbel Achour; Kelly Regan; Eric R. Gamazon; James L. Chen; Xinan Holly Yang; Nancy J. Cox; Yves A. Lussier (J. Am. Medical Informatics Assoc., 2013)

COPD Hospitalization Risk Increased with Distinct Patterns of Multiple Systems Comorbidities Unveiled by Network Modeling. - Young Ji Lee; Andrew D. Boyd; Jianrong Li; Vincent Gardeux; Colleen Kenost; Donald Saner; Haiquan Li; Ivo L. Abraham; Jerry A. Krishnan; Yves A. Lussier (AMIA, 2014)

'N-of-1-pathways' unveils personal deregulated mechanisms from a single pair of RNA-Seq samples: towards precision medicine. - Vincent Gardeux; Ikbel Achour; Jianrong Li; Mark Maienschein-Cline; Haiquan Li; Lorenzo L. Pesce; Gurunadh Parinandi; Neil Bahroos; Robert Winn; Ian T. Foster; Joe G. N. Garcia; Yves A. Lussier (J. Am. Medical Informatics Assoc., 2014)

Dynamic changes of RNA-sequencing expression for precision medicine: N-of-1-pathways Mahalanobis distance within pathways of single subjects predicts breast cancer survival. - A. Grant Schissler; Vincent Gardeux; Qike Li; Ikbel Achour; Haiquan Li; Walter W. Piegorsch; Yves A. Lussier (Bioinform., 2015)

eQTL networks unveil enriched mRNA master integrators downstream of complex disease-associated SNPs. - Haiquan Li; Nima Pouladi; Ikbel Achour; Vincent Gardeux; Jianrong Li; Qike Li; Hao Helen Zhang; Fernando D. Martinez; Joe G. N. 'Skip' Garcia; Yves A. Lussier (J. Biomed. Informatics, 2015)

Analysis of aggregated cell-cell statistical distances within pathways unveils therapeutic-resistance mechanisms in circulating tumor cells. - A. Grant Schissler; Qike Li; James L. Chen; Colleen Kenost; Ikbel Achour; Dean Billheimer; Haiquan Li; Walter W. Piegorsch; Yves A. Lussier (Bioinform., 2016)

A genome-by-environment interaction classifier for precision medicine: personal transcriptome response to rhinovirus identifies children prone to asthma exacerbations. - Vincent Gardeux; Joanne Berghout; Ikbel Achour; A. Grant Schissler; Qike Li; Colleen Kenost; Jianrong Li; Yuan Shang; Anthony Bosco; Donald Saner; Marilyn J. Halonen; Daniel Jackson 003; et al. (J. Am. Medical Informatics Assoc., 2017)

kMEn: Analyzing noisy and bidirectional transcriptional pathway responses in single subjects. - Qike Li; A. Grant Schissler; Vincent Gardeux; Joanne Berghout; Ikbel Achour; Colleen Kenost; Haiquan Li; Hao Helen Zhang; Yves A. Lussier (J. Biomed. Informatics, 2017)

Convergent downstream candidate mechanisms of independent intergenic polymorphisms between co-classified diseases implicate epistasis among noncoding elements. - Jiali Han; Jianrong Li; Ikbel Achour; Lorenzo L. Pesce; Ian T. Foster; Haiquan Li; Yves A. Lussier (PSB, 2018)

Interpretation of 'Omics dynamics in a single subject using local estimates of dispersion between two transcriptomes. - Qike Li; Samir Rachid Zaim; Dillon Aberasturi; Joanne Berghout; Haiquan Li; Francesca Vitali; Colleen Kenost; Hao Helen Zhang; Yves A. Lussier (AMIA, 2019)

Translational informatics of population Health: How large biomolecular and clinical datasets unite. - Yves A. Lussier; Atul J. Butte; Haiquan Li; Rong Chen; Jason H. Moore (PSB, 2019)

Precision drug repurposing via convergent eQTL-based molecules and pathway targeting independent disease-associated polymorphisms. - Francesca Vitali; Joanne Berghout; Jung-wei Fan; Jianrong Li; Qike Li; Haiquan Li; Yves A. Lussier (PSB, 2019)

Estimation of Vibration Characteristics of a Space Manipulator From Air Bearing Supported Test Data. - Haiquan Li; Qingqing Wei; Jianxun Liang; Weiyan Ren; Zixin Tang; Delun Li (Frontiers Robotics AI, 2021)

Metro station evacuation safety assessment considering emergency response. - Haiquan Li; Yan Wang; Juncheng Jiang; Ru Zhou (Simul., 2022)

Random Forest Classification of Multitemporal Landsat 8 Spectral Data and Phenology Metrics for Land Cover Mapping in the Sonoran and Mojave Deserts. - Madeline Melichar; Kamel Didan; Armando Barreto-Muñoz; Jennifer N. Duberstein; Eduardo Jiménez Hernández; Theresa Crimmins; Haiquan Li; Myles Traphagen; Kathryn A. Thomas; Pamela L. Nagler (Remote. Sens., 2023)