Reverse Engineering of Gene Regulation Networks with an Application to the DREAM4 in silico Network Challenge. - Hyonho Chun; Jia Kang; Xianghua Zhang; Minghua Deng; Haisu Ma; Hongyu Zhao 003 (Handbook of Statistical Bioinformatics, 2011)

COSINE: COndition-SpecIfic sub-NEtwork identification using a global optimization method. - Haisu Ma; Eric E. Schadt; Lee M. Kaplan; Hongyu Zhao 003 (Bioinform., 2011)

iFad: an integrative factor analysis model for drug-pathway association inference. - Haisu Ma; Hongyu Zhao 003 (Bioinform., 2012)

FacPad: Bayesian sparse factor modeling for the inference of pathways responsive to drug treatment. - Haisu Ma; Hongyu Zhao 003 (Bioinform., 2012)