HMCan: a method for detecting chromatin modifications in cancer samples using ChIP-seq data. - Haitham Ashoor; Aurélie Hérault; Aurélie Kamoun; François Radvanyi; Vladimir B. Bajic; Emmanuel Barillot; Valentina Boeva (Bioinform., 2013)

Dragon TIS Spotter: an Arabidopsis-derived predictor of translation initiation sites in plants. - Arturo Magana-Mora; Haitham Ashoor; Boris R. Jankovic; Allan Kamau; Karim Awara; Rajesh Chowdhary; John A. C. Archer; Vladimir B. Bajic (Bioinform., 2013)

DENdb: database of integrated human enhancers. - Haitham Ashoor; Dimitrios Kleftogiannis; Aleksandar Radovanovic; Vladimir B. Bajic (Database J. Biol. Databases Curation, 2015)

HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. - Ivan V. Kulakovskiy; Ilya E. Vorontsov; Ivan S. Yevshin; Anastasiia V. Soboleva; Artem S. Kasianov; Haitham Ashoor; Wail Ba-alawi; Vladimir B. Bajic; Yulia A. Medvedeva; Fedor A. Kolpakov; Vsevolod J. Makeev (Nucleic Acids Res., 2016)

Computational Methods for ChIP-seq Data Analysis and Applications. - Haitham Ashoor (2017)

DDR: efficient computational method to predict drug-target interactions using graph mining and machine learning approaches. - Rawan S. Olayan; Haitham Ashoor; Vladimir B. Bajic (Bioinform., 2018)

TELS: A Novel Computational Framework for Identifying Motif Signatures of Transcribed Enhancers. - Dimitrios Kleftogiannis; Haitham Ashoor; Vladimir B. Bajic (Genom. Proteom. Bioinform., 2018)

Genome Informatics. - Anil K. Kesarwani; Ankit Malhotra; Anuj Srivastava; Guruprasad Ananda; Haitham Ashoor; Parveen Kumar; Rupesh K. Kesharwani; Vishal Kumar Sarsani; Yi Li; Joshy George; Krishna M. Karuturi (Encyclopedia of Bioinformatics and Computational Biology (2), 2019)

Computational Drug-target Interaction Prediction based on Graph Embedding and Graph Mining. - Maha A. Thafar; Somayah Albaradei; Rawan S. Olayan; Haitham Ashoor; Magbubah Essack; Vladimir B. Bajic (ICBBB, 2020)

DTiGEMS+: drug-target interaction prediction using graph embedding, graph mining, and similarity-based techniques. - Maha A. Thafar; Rawan S. Olayan; Haitham Ashoor; Somayah Albaradei; Vladimir B. Bajic; Xin Gao 001; Takashi Gojobori; Magbubah Essack (J. Cheminformatics, 2020)