Predictive ranking: a novel page ranking approach by estimating the web structure. - Haixuan Yang; Irwin King; Michael R. Lyu (WWW (Special interest tracks and posters), 2005)

Predictive Random Graph Ranking on the Web. - Haixuan Yang; Irwin King; Michael R. Lyu (IJCNN, 2006)

A point-distribution index and its application to sensor-grouping in wireless sensor networks. - Yangfan Zhou; Haixuan Yang; Michael R. Lyu; Edith C. H. Ngai (IWCMC, 2006)

DiffusionRank: a possible penicillin for web spamming. - Haixuan Yang; Irwin King; Michael R. Lyu (SIGIR, 2007)

The generalized dependency degree between attributes. - Haixuan Yang; Irwin King; Michael R. Lyu (J. Assoc. Inf. Sci. Technol., 2007)

Learning latent semantic relations from clickthrough data for query suggestion. - Hao Ma 001; Haixuan Yang; Irwin King; Michael R. Lyu (CIKM, 2008)

Mining social networks using heat diffusion processes for marketing candidates selection. - Hao Ma 001; Haixuan Yang; Michael R. Lyu; Irwin King (CIKM, 2008)

SoRec: social recommendation using probabilistic matrix factorization. - Hao Ma 001; Haixuan Yang; Michael R. Lyu; Irwin King (CIKM, 2008)

Learning with Consistency between Inductive Functions and Kernels. - Haixuan Yang; Irwin King; Michael R. Lyu (NIPS, 2008)

Semi-nonnegative matrix factorization with global statistical consistency for collaborative filtering. - Hao Ma 001; Haixuan Yang; Irwin King; Michael R. Lyu (CIKM, 2009)

A Volume-Based Heat-Diffusion Classifier. - Haixuan Yang; Michael R. Lyu; Irwin King (IEEE Trans. Syst. Man Cybern. Part B, 2009)

Improving GO semantic similarity measures by exploring the ontology beneath the terms and modelling uncertainty. - Haixuan Yang; Tamás Nepusz; Alberto Paccanaro (Bioinform., 2012)

GOssTo: a stand-alone application and a web tool for calculating semantic similarities on the Gene Ontology. - Horacio Caniza; Alfonso E. Romero; Samuel Heron; Haixuan Yang; Alessandra Devoto; Marco Frasca 001; Marco Mesiti; Giorgio Valentini; Alberto Paccanaro (Bioinform., 2014)

A 2-Layered Graph Based Diffusion Approach for Altmetric Analysis. - Mohan Timilsina; Haixuan Yang; Dietrich Rebholz-Schuhmann (ASONAM, 2018)

Predicting links between tumor samples and genes using 2-Layered graph based diffusion approach. - Mohan Timilsina; Haixuan Yang; Ratnesh Sahay; Dietrich Rebholz-Schuhmann (BMC Bioinform., 2019)

Heat diffusion approach for scientific impact analysis in social media. - Mohan Timilsina; Mathieu d'Aquin; Haixuan Yang (Soc. Netw. Anal. Min., 2019)

Semi-supervised regression using diffusion on graphs. - Mohan Timilsina; Alejandro Figueroa 001; Mathieu d'Aquin; Haixuan Yang (Appl. Soft Comput., 2021)

Protein function prediction for newly sequenced organisms. - Mateo Torres; Haixuan Yang; Alfonso E. Romero; Alberto Paccanaro (Nat. Mach. Intell., 2021)

Boundary heat diffusion classifier for a semi-supervised learning in a multilayer network embedding. - Mohan Timilsina; Vít Novácek; Mathieu d'Aquin; Haixuan Yang (Neural Networks, 2022)

Synergy Between Embedding and Protein Functional Association Networks for Drug Label Prediction Using Harmonic Function. - Mohan Timilsina; Declan Patrick Mc Kernan; Haixuan Yang; Mathieu d'Aquin (IEEE ACM Trans. Comput. Biol. Bioinform., 2022)

Host centric drug repurposing for viral diseases. - Suzana de Siqueira Santos; Haixuan Yang; Aldo Galeano; Alberto Paccanaro (PLoS Comput. Biol., 2025)