3DRobot: automated generation of diverse and well-packed protein structure decoys. - Haiyou Deng; Ya Jia; Yang Zhang 040 (Bioinform., 2016)

Diverse effects of distance cutoff and residue interval on the performance of distance-dependent atom-pair potential in protein structure prediction. - Yuangen Yao; Rong Gui; Quan Liu; Ming Yi; Haiyou Deng (BMC Bioinform., 2017)

ANDIS: an atomic angle- and distance-dependent statistical potential for protein structure quality assessment. - Zhongwang Yu; Yuangen Yao; Haiyou Deng; Ming Yi (BMC Bioinform., 2019)