A comparative study of SMILES-based compound similarity functions for drug-target interaction prediction. - Hakime Öztürk; Elif Özkirimli Ölmez; Arzucan Özgür (BMC Bioinform., 2016)

BIOSSES: a semantic sentence similarity estimation system for the biomedical domain. - Gizem Sogancioglu; Hakime Öztürk; Arzucan Özgür (Bioinform., 2017)

A novel methodology on distributed representations of proteins using their interacting ligands. - Hakime Öztürk; Elif Özkirimli Ölmez; Arzucan Özgür (Bioinform., 2018)

DeepDTA: deep drug-target binding affinity prediction. - Hakime Öztürk; Arzucan Özgür; Elif Özkirimli Ölmez (Bioinform., 2018)

A chemical language based approach for protein - ligand interaction prediction. - Hakime Öztürk; Arzucan Özgür; Elif Özkirimli Ölmez (CoRR, 2018)

WideDTA: prediction of drug-target binding affinity. - Hakime Öztürk; Elif Özkirimli Ölmez; Arzucan Özgür (CoRR, 2019)

Text-based machine learning methodologies for modelling drug-target interactions (Protein-ilaç etkileşimlerinin metin tabanlı makine öğrenmesi yöntemleri ile modellenmesi) - Hakime Öztürk (2019)

Exploring Chemical Space using Natural Language Processing Methodologies for Drug Discovery. - Hakime Öztürk; Arzucan Özgür; Philippe Schwaller; Teodoro Laino; Elif Özkirimli Ölmez (CoRR, 2020)