Batch discovery of recurring rare classes toward identifying anomalous samples. - Murat Dundar; Halid Ziya Yerebakan; Bartek Rajwa (KDD, 2014)

The Infinite Mixture of Infinite Gaussian Mixtures. - Halid Ziya Yerebakan; Bartek Rajwa; Murat Dundar (NIPS, 2014)

A Non-parametric Bayesian Model for Joint Cell Clustering and Cluster Matching: Identification of Anomalous Sample Phenotypes with Random Effects. - Murat Dundar; Ferit Akova; Halid Ziya Yerebakan; Bartek Rajwa (BMC Bioinform., 2014)

Hierarchical Latent Word Clustering. - Halid Ziya Yerebakan; Fitsum A. Reda; Yiqiang Zhan; Yoshihisa Shinagawa (CoRR, 2016)

Partially collapsed parallel Gibbs sampler for Dirichlet process mixture models. - Halid Ziya Yerebakan; Murat Dundar (Pattern Recognit. Lett., 2017)

Document Representation Learning for Patient History Visualization. - Halid Ziya Yerebakan; Yoshihisa Shinagawa; Parmeet S. Bhatia; Yiqiang Zhan (COLING (Demos), 2018)

False positive reduction of vasculature for pulmonary nodule detection. - Colin B. Hansen; Yiyuan Zhao; Halid Ziya Yerebakan; Luca Bogoni; Anna K. Jerebko (Computer-Aided Diagnosis, 2020)

Supervised Understanding of Word Embeddings. - Halid Ziya Yerebakan; Parmeet S. Bhatia; Yoshihisa Shinagawa (CoRR, 2020)

MedTextSeg: A Deep Dual Sequential Model for Section Segmentation in Medical Reports. - Shaika Chowdhury; Halid Ziya Yerebakan; Yoshihisa Shinagawa; Philip S. Yu (IEEE BigData, 2021)

A Hierarchical Descriptor Framework for On-the-Fly Anatomical Location Matching Between Longitudinal Studies. - Halid Ziya Yerebakan; Yoshihisa Shinagawa; Mahesh Ranganath; Simon Allen-Raffl; Gerardo Hermosillo Valadez (MTSAIL/LEAF/AI4Treat/MMMI/REMIA@MICCAI, 2023)

Deep Generative Neural Embeddings for High Dimensional Data Visualization. - Halid Ziya Yerebakan; Gerardo Hermosillo Valadez (CoRR, 2023)

Enhancing Health Data Interoperability with Large Language Models: A FHIR Study. - Yikuan Li; Hanyin Wang; Halid Ziya Yerebakan; Yoshihisa Shinagawa; Yuan Luo 001 (CoRR, 2023)

SAMU: An Efficient and Promptable Foundation Model for Medical Image Segmentation. - Joseph Bae; Xueqi Guo; Halid Ziya Yerebakan; Yoshihisa Shinagawa; Sepehr Farhand (MedAGI@MICCAI, 2024)

Real Time Multi Organ Classification on Computed Tomography Images. - Halid Ziya Yerebakan; Yoshihisa Shinagawa; Gerardo Hermosillo Valadez (DEMI@MICCAI, 2024)

Automatic Mapping of Anatomical Landmarks from Free-Text Using Large Language Models: Insights from Llama-2. - Mohamad Abdi; Gerardo Hermosillo Valadez; Halid Ziya Yerebakan (CoRR, 2024)

BodyGPS: Anatomical Positioning System. - Halid Ziya Yerebakan; Kritika Iyer; Xueqi Guo; Yoshihisa Shinagawa; Gerardo Hermosillo Valadez (CoRR, 2025)

Consistent Point Matching. - Halid Ziya Yerebakan; Gerardo Hermosillo Valadez (CoRR, 2025)