Bayesian network prior: network analysis of biological data using external knowledge. - Senol Isci; Haluk Dogan; Cengizhan Ozturk; Hasan H. Otu (Bioinform., 2014)

Elucidation of MicroRNA-Gene Regulation in Human Cancer with Integrative Network Models. - Haluk Dogan; Zeynep Hakguder; Stephen Scott 001; Juan Cui (BIBM, 2019)

A New Approach to Batch Effect Removal Based on Distribution Matching in Latent Space. - Huaqing Li 004; Haluk Dogan; Juan Cui (BIBM, 2019)

Formal Language Constraints for Markov Decision Processes. - Eleanor Quint; Dong Xu 021; Haluk Dogan; Zeynep Hakguder; Stephen Scott 001; Matthew B. Dwyer (CoRR, 2019)

Elucidation of dynamic microRNA regulations in cancer progression using integrative machine learning. - Haluk Dogan; Zeynep Hakguder; Roland Madadjim; Stephen Scott 001; Massimiliano Pierobon; Juan Cui (Briefings Bioinform., 2021)

Computational learning of small RNA regulation in pancreatic cancer progression. - Roland Madadjim; Haluk Dogan; Juan Cui (BIBM, 2022)