Designing multiple degenerate primers via consecutive pairwise alignments. - Hamed Shateri Najafabadi; Noorossadat Torabi; Mahmood Chamankhah (BMC Bioinform., 2008)

A compendium of RNA-binding motifs for decoding gene regulation. - Debashish Ray; Hilal Kazan; Kate B. Cook; Matthew T. Weirauch; Hamed S. Najafabadi; Xiao Li; Serge Gueroussov; Mihai Albu; Hong Zheng; Ally Yang; Hong Na; Manuel Irimia; et al. (Nat., 2013)

Identification of C2H2-ZF binding preferences from ChIP-seq data using RCADE. - Hamed Shateri Najafabadi; Mihai Albu; Timothy R. Hughes (Bioinform., 2015)

Motif comparison based on similarity of binding affinity profiles. - Samuel A. Lambert; Mihai Albu; Timothy R. Hughes; Hamed Shateri Najafabadi (Bioinform., 2016)

SharePro: an accurate and efficient genetic colocalization method accounting for multiple causal signals. - Wenmin Zhang; Tianyuan Lu; Robert Sladek; Yue Li; Hamed S. Najafabadi; Josée Dupuis (Bioinform., 2024)