Impact of RNA structure on the prediction of donor and acceptor splice sites. - Sayed-Amir Marashi; Changiz Eslahchi; Hamid Pezeshk; Mehdi Sadeghi (BMC Bioinform., 2006)

Importance of RNA secondary structure information for yeast donor and acceptor splice site predictions by neural networks. - Sayed-Amir Marashi; Hani Goodarzi; Mehdi Sadeghi; Changiz Eslahchi; Hamid Pezeshk (Comput. Biol. Chem., 2006)

Impact of residue accessible surface area on the prediction of protein secondary structures. - Amir Momen-Roknabadi; Mehdi Sadeghi; Hamid Pezeshk; Sayed-Amir Marashi (BMC Bioinform., 2008)

A tale of two symmetrical tails: Structural and functional characteristics of palindromes in proteins. - Armita Sheari; Mehdi Kargar; Ali Katanforoush; Shahriar Arab; Mehdi Sadeghi; Hamid Pezeshk; Changiz Eslahchi; Sayed-Amir Marashi (BMC Bioinform., 2008)

PROSIGN: A method for protein secondary structure assignment based on three-dimensional coordinates of consecutive Calpha atoms. - Sayed-Rzgar Hosseini; Mehdi Sadeghi; Hamid Pezeshk; Changiz Eslahchi; Mahnaz Habibi (Comput. Biol. Chem., 2008)

Global haplotype partitioning for maximal associated SNP pairs. - Ali Katanforoush; Mehdi Sadeghi; Hamid Pezeshk; Elahe Elahi (BMC Bioinform., 2009)

STON: A novel method for protein three-dimensional structure comparison. - Changiz Eslahchi; Hamid Pezeshk; Mehdi Sadeghi; Amir Massoud Rahimi; Heydar Maboudi Afkham; Shahriar Arab (Comput. Biol. Medicine, 2009)

A pairwise residue contact area-based mean force potential for discrimination of native protein structure. - Shahriar Arab; Mehdi Sadeghi; Changiz Eslahchi; Hamid Pezeshk; Armita Sheari (BMC Bioinform., 2010)

A clustering approach for estimating parameters of a profile hidden Markov model. - Rosa Aghdam; Hamid Pezeshk; Seyed Amir Malekpour; Soudabeh Shemehsavar; Changiz Eslahchi (Int. J. Data Min. Bioinform., 2013)

Increased robustness of early embryogenesis through collective decision-making by key transcription factors. - Ali Sharifi-Zarchi; Mehdi Totonchi; Keynoush Khaloughi; Razieh Karamzadeh; Marcos J. Araúzo-Bravo; Hossein Baharvand; Ruzbeh Tusserkani; Hamid Pezeshk; Hamidreza Chitsaz; Mehdi Sadeghi (BMC Syst. Biol., 2015)

PSE-HMM: genome-wide CNV detection from NGS data using an HMM with Position-Specific Emission probabilities. - Seyed Amir Malekpour; Hamid Pezeshk; Mehdi Sadeghi (BMC Bioinform., 2017)

Task modulates functional connectivity networks in free viewing behavior. - Hossein Seidkhani; Andrey R. Nikolaev; Radha Nila Meghanathan; Hamid Pezeshk; Ali Masoudi-Nejad; Cees van Leeuwen (NeuroImage, 2017)

Some node ordering methods for the K2 algorithm. - Rosa Aghdam; Vahid Rezaei Tabar; Hamid Pezeshk (Comput. Intell., 2019)

Inter-protein residue covariation information unravels physically interacting protein dimers. - Sara Salmanian; Hamid Pezeshk; Mehdi Sadeghi (BMC Bioinform., 2020)

A Network-Based Comparison Between Molecular Apocrine Breast Cancer Tumor and Basal and Luminal Tumors by Joint Graphical Lasso. - Maryam S. Daneshpour; Hossein Mahjub; Hamid Pezeshk; Mehdi Sadeghi (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)