Mechanical forces mediate localized topological change in epithelia. - Yingzi Li; Hammad Naveed; Sema Kachalo; Lisa X. Xu; Jie Liang 002 (EMBC, 2011)

Modeling spatial population dynamics of stem cell lineage in tissue growth. - Youfang Cao; Claire Liang; Hammad Naveed; Yingzi Li; Meng Chen; Qing Nie (EMBC, 2012)

Modeling spatial population dynamics of stem cell lineage in wound healing and cancerogenesis. - Youfang Cao; Hammad Naveed; Claire Liang; Jie Liang 002 (EMBC, 2013)

Dynamic mechanical finite element model of biological cells for studying cellular pattern formation. - Jieling Zhao; Hammad Naveed; Sema Kachalo; Youfang Cao; Wei Tian 003; Jie Liang 002 (EMBC, 2013)

Structure-based protein-protein interaction networks and drug design. - Hammad Naveed; Jing-Dong J. Han (Quant. Biol., 2013)

Effects of mechanical properties on tumor invasion: Insights from a cellular model. - Yingzi Li; Hammad Naveed; Jie Liang 002; Lisa X. Xu (EMBC, 2014)

Pairwise structure alignment specifically tuned for surface pockets and interaction interfaces. - Xuefeng Cui; Hammad Naveed; Xin Gao 001 (BCB, 2015)

Finding optimal interaction interface alignments between biological complexes. - Xuefeng Cui; Hammad Naveed; Xin Gao 001 (Bioinform., 2015)

An integrated structure- and system-based framework to identify new targets of metabolites and known drugs. - Hammad Naveed; Umar S. Hameed; Deborah Harrus; William Bourguet; Stefan T. Arold; Xin Gao 001 (Bioinform., 2015)

ModuleAlign: module-based global alignment of protein-protein interaction networks. - Somaye Hashemifar; Jianzhu Ma; Hammad Naveed; Stefan Canzar; Jinbo Xu (Bioinform., 2016)

Efficient computation of transfer free energies of amino acids in beta-barrel membrane proteins. - Wei Tian 003; Meishan Lin; Hammad Naveed; Jie Liang 002 (Bioinform., 2017)

Leveraging digital media data for pharmacovigilance. - Hammad Farooq; Junaid S. Niaz; Saira Fakhar; Hammad Naveed (AMIA, 2020)

Predicting the pathogenicity of protein coding mutations using Natural Language Processing. - Naeem Rehmat; Hammad Farooq; Sanjay Kumar; Sibt ul Hussain; Hammad Naveed (EMBC, 2020)

PRRAT_AM - An advanced ant-miner to extract accurate and comprehensible classification rules. - Umair Ayub; Hammad Naveed; Waseem Shahzad (Appl. Soft Comput., 2020)

HECNet: a hierarchical approach to enzyme function classification using a Siamese Triplet Network. - Safyan Aman Memon; Kinaan Aamir Khan; Hammad Naveed (Bioinform., 2020)

SAlign-a structure aware method for global PPI network alignment. - Umair Ayub; Imran Haider; Hammad Naveed (BMC Bioinform., 2020)

Identification of potential inhibitors of three key enzymes of SARS-CoV2 using computational approach. - Hafsa Iftikhar; Hafiza Nayyer Ali; Sadia Farooq; Hammad Naveed; Syed Shahzad-ul-Hussan (Comput. Biol. Medicine, 2020)

A Generic Approach for Classification of Psychological Disorders Diagnosis using EEG. - Talha Anwar; Naeem Rehmat; Hammad Naveed (EMBC, 2021)

Computational Prediction of lncRNA-Protein Interactions using Machine learning. - Muhammad Mushtaq; Hammad Naveed; Zoya Khalid (EMBC, 2021)

Role of Cell Morphology in Classical Delta-Notch Pattern Formation. - Sana Saleh; Mukhtar Ullah; Hammad Naveed (EMBC, 2021)

Cell fate determination is influenced by Notch heterogeneity. - Sana Saleh; Mukhtar Ullah; Hammad Naveed (EMBC, 2021)

Bias Adjustable Activation Network for Imbalanced Data - Diabetic Foot Ulcer Challenge 2021. - Salman Ahmed; Hammad Naveed (DFUC@MICCAI, 2021)

PMNet: A probability map based scaled network for breast cancer diagnosis. - Salman Ahmed; Maria Tariq; Hammad Naveed (Comput. Medical Imaging Graph., 2021)

OpTorch: Optimized deep learning architectures for resource limited environments. - Salman Ahmed; Hammad Naveed (CoRR, 2021)

Identifying Novel Drug Targets by iDTPnd: A Case Study of Kinase Inhibitors. - Hammad Naveed; Corinna Reglin; Thomas Schubert; Xin Gao 001; Stefan T. Arold; Michael L. Maitland (Genom. Proteom. Bioinform., 2021)

Masked Language Modeling for Resource Constrained Biological Natural Language Processing. - Haasha Bin Atif; Hamza Alvi; Hammad Naveed (EMBC, 2023)

MedTSS: transforming abstractive summarization of scientific articles with linguistic analysis and concept reinforcement. - Nadia Saeed; Hammad Naveed (Knowl. Inf. Syst., 2024)