Modeling gene regulatory networks using neural network architectures. - Hantao Shu; Jingtian Zhou; Qiuyu Lian; Han Li 018; Dan Zhao 004; Jianyang Zeng 001; Jianzhu Ma (Nat. Comput. Sci., 2021)

MoTSE. - Han Li 018 (Zenodo, 2021)

KPGT: Knowledge-Guided Pre-training of Graph Transformer for Molecular Property Prediction. - Han Li 018; Dan Zhao 004; Jianyang Zeng 001 (KDD, 2022)

Improving comparative analyses of Hi-C data via contrastive self-supervised learning. - Han Li 018; Xuan He; Lawrence Kurowski; Ruotian Zhang; Dan Zhao 004; Jianyang Zeng 001 (Briefings Bioinform., 2023)

PRS-Net: Interpretable Polygenic Risk Scores via Geometric Learning. - Han Li 018; Jianyang Zeng 001; Michael P. Snyder; Sai Zhang (RECOMB, 2024)

PepGB: Facilitating peptide drug discovery via graph neural networks. - Yipin Lei; Xu Wang; Meng Fang; Han Li 018; Xiang Li; Jianyang Zeng 001 (CoRR, 2024)