Calcium homeostasis: a feedback control point of view. - Hana El-Samad; Mustafa Khammash; J. Goff (ACC, 2000)

Calcium Homeostasis: A Feedback Control Point of View. - Hana El-Samad; Mustafa Khammash (BIBE, 2000)

Feedback regulation of the heat shock response in E. coli. - Hiroyuki Kurata; Hana El-Samad; Tau-Mu Yi; Mustafa Khammash; John Doyle 001 (CDC, 2001)

Robustness analysis of the heat shock response in E. coli. - Hana El-Samad; Mustafa Khammash; Hiroyuki Kurata; John Doyle 001 (ACC, 2002)

Model validation and robust stability analysis of the bacterial heat shock response using SOSTOOLS. - Hana El-Samad; Stephen Prajna; Antonis Papachristodoulou; Mustafa Khammash; John C. Doyle 001 (CDC, 2003)

Stochastic stability and its application to the analysis of gene regulatory networks. - Hana El-Samad; Mustafa Khammash (CDC, 2004)

Repressilators and promotilators: loop dynamics in synthetic gene networks. - Hana El-Samad; Domitilla Del Vecchio; Mustafa Khammash (ACC, 2005)

Stochastic Modeling and Analysis of Genetic Networks. - Mustafa Khammash; Hana El-Samad (CDC/ECC, 2005)

Stochastic reachability analysis in complex biological networks. - Hana El-Samad; Maryam Fazel; Xin Liu; Antonis Papachristodoulou; Stephen Prajna (ACC, 2006)

Coherence Resonance: A Mechanism for Noise Induced Stable Oscillations in Gene Regulatory Networks. - Hana El-Samad; Mustafa Khammash (CDC, 2006)

Advanced Methods and Algorithms for Biological Networks Analysis. - Hana El-Samad; Stephen Prajna; Antonis Papachristodoulou; John Doyle 001; Mustafa Khammash (Proc. IEEE, 2006)

Module-Based Analysis of Robustness Tradeoffs in the Heat Shock Response System. - Hiroyuki Kurata; Hana El-Samad; Rei Iwasaki; Hisao Ohtake; John C. Doyle 001; Irina Grigorova; Carol A. Gross; Mustafa Khammash (PLoS Comput. Biol., 2006)

Algorithms for Discriminating Between Biochemical Reaction Network Models: Towards Systematic Experimental Design. - Antonis Papachristodoulou; Hana El-Samad (ACC, 2007)

Reversible-equivalent-monomolecular tau: A leaping method for "small number and stiff" stochastic chemical systems. - Muruhan Rathinam; Hana El-Samad (J. Comput. Phys., 2007)

Discriminating between rival biochemical network models: three approaches to optimal experiment design. - Bence Mélykúti; Elias August; Antonis Papachristodoulou; Hana El-Samad (BMC Syst. Biol., 2010)

Modelling and analysis of gene regulatory network using feedback control theory. - Hana El-Samad; Mustafa Khammash (Int. J. Syst. Sci., 2010)

A non-memoryless stochastic simulation algorithm for modeling diffusion-reactions on biological membranes. - Michael Chevalier; Hana El-Samad (CDC, 2012)

The Impact of Different Sources of Fluctuations on Mutual Information in Biochemical Networks. - Michael Chevalier; Ophelia S. Venturelli; Hana El-Samad (PLoS Comput. Biol., 2015)

Tradeoffs in adapting biological systems. - Rajat Bhatnagar; Hana El-Samad (Eur. J. Control, 2016)

De novo design of bioactive protein switches. - Robert A. Langan; Scott E. Boyken; Andrew H. Ng; Jennifer A. Samson; Galen Dods; Alexandra M. Westbrook; Taylor H. Nguyen; Marc J. Lajoie; Zibo Chen; Stephanie Berger; Vikram Khipple Mulligan; John E. Dueber; et al. (Nat., 2019)

Modular and tunable biological feedback control using a de novo protein switch. - Andrew H. Ng; Taylor H. Nguyen; Mariana Gómez-Schiavon; Galen Dods; Robert A. Langan; Scott E. Boyken; Jennifer A. Samson; Lucas M. Waldburger; John E. Dueber; David Baker 001; Hana El-Samad (Nat., 2019)

Semantic Information and Channel Capacity: A Unified Perspective for the Molecular Channel. - Francesca Ratti; Benjamin A. Yang; Cyril Lagger; Achal Mahajan; Ban Wang; James H. Kaufman; Vishrawas Gopalakrishnan; Hana El-Samad (GLOBECOM, 2024)

Pathspace Kalman Filters with Dynamic Process Uncertainty for Analyzing Time-course Data. - Chaitra Agrahar; William Poole; Simone Bianco 002; Hana El-Samad (CoRR, 2024)