Evolving BioAssay Ontology (BAO): modularization, integration and applications. - Saminda Abeyruwan; Uma D. Vempati; Hande Küçük-McGinty; Ubbo Visser; Amar Koleti; Ahsan Mir; Kunie Sakurai; Caty Chung; Joshua A. Bittker; Paul A. Clemons; Steve Brudz; Anosha Siripala; et al. (J. Biomed. Semant., 2014)

Building Concordant Ontologies for Drug Discovery. - Hande Küçük-McGinty; Saurabh Mehta; Yu Lin; Nooshin Nabizadeh; Vasileios Stathias; Dusica Vidovic; Amar Koleti; Christopher Mader; Jianbin Duan; Ubbo Visser; Stephan C. Schürer (ICBO/BioCreative, 2016)

Drug target ontology to classify and integrate drug discovery data. - Yu Lin; Saurabh Mehta; Hande Küçük-McGinty; John Paul Turner; Dusica Vidovic; Michele Forlin; Amar Koleti; Dac-Trung Nguyen; Lars Juhl Jensen; Rajarshi Guha; Stephen L. Mathias; Oleg Ursu; et al. (J. Biomed. Semant., 2017)

Standardization of assay representation in the Ontology for Biomedical Investigations. - Randi Vita; Jie Zheng 001; Rebecca C. Jackson; Damion M. Dooley; James A. Overton; Mark A. Miller; Daniel C. Berrios; Richard H. Scheuermann; Yongqun He; Hande Küçük-McGinty; Mathias Brochhausen; Aisyah Yu Lin; et al. (Database J. Biol. Databases Curation, 2021)

Besoins ontologiques pour la transformation des aliments. - Damion M. Dooley; Magalie Weber; Liliana Ibanescu; Matthew Lange; Lauren E. Chan; Larisa N. Soldatova; Chen Yang 022; Robert Warren; Cogan Shimizu; Hande McGinty; William Hsiao (IC, 2023)

Tutorials at The Web Conference 2023. - Valeria Fionda; Olaf Hartig; Reyhaneh Abdolazimi; Sihem Amer-Yahia; Hongzhi Chen; Xiao Chen 016; Peng Cui 001; Jeffrey Dalton 001; Xin Luna Dong; Lisette Espín-Noboa; Wenqi Fan; Manuela Fritz; et al. (WWW (Companion Volume), 2023)

Leveraging Existing Literature on the Web and Deep Neural Models to Build a Knowledge Graph Focused on Water Quality and Health Risks. - Nikita Gautam; David Shumway; Megan Kowalcyk; Sarthak Khanal; Doina Caragea; Cornelia Caragea; Hande McGinty; Samuel Dorevitch (WWW, 2023)

Sustainable Grain Transportation in Ukraine Amidst War Utilizing KNARM and KnowWhereGraph. - Yinglun Zhang; Antonina Broyaka; Jude Kastens; Allen M. Featherstone; Cogan Shimizu; Pascal Hitzler; Hande Küçük-McGinty (WWW (Companion Volume), 2023)

ON TO A Better Path to Choose Your Best Ontologies. - Asiyah Yu Lin; John Graybeal; Anna Maria Masci; Juliane Schneider; Ruth Duerr; Eric G. Stephan; Hande Küçük-McGinty (ICBO, 2024)

A GUI for OBO Foundry's ROBOT Library to Encourage Usability and Adoption. - Luke Liu; Yinglun Zhang; Hande Küçük-McGinty; Muhammad Amith (ICHI, 2024)

VEL: A Formally Verified Reasoner for EL++ Description Logic. - Atalay Mert Ileri; Hande McGinty (ISWC (Posters/Demos/Industry), 2024)

VEL: A Formally Verified Reasoner for OWL2 EL Profile. - Atalay Mert Ileri; Nalen Rangarajan; Jack Cannell; Hande McGinty (CoRR, 2024)

OBO Foundry food ontology interconnectivity. - Damion M. Dooley; Liliana Andrés-Hernández; Georgeta Bordea; Leigh Carmody; Duccio Cavalieri; Lauren E. Chan; Pol Castellano-Escuder; Carl Lachat; Fleur Mougin; Francesco Vitali; Chen Yang 022; Magalie Weber; et al. (Semantic Web, 2024)

Food process ontology requirements. - Damion M. Dooley; Magalie Weber; Liliana Ibanescu; Matthew Lange; Lauren E. Chan; Larisa N. Soldatova; Chen Yang 022; Robert Warren; Cogan Shimizu; Hande McGinty; William Hsiao (Semantic Web, 2024)

Towards a Global Food Systems Datahub. - Hande Küçük-McGinty; Cogan Shimizu; Pascal Hitzler; Ajay Sharda (Semantic Web, 2024)

Enhancing Aging Biomarker Research through Large Language Models and Knowledge Graphs (Student Abstract). - Srikar Reddy Gadusu; Yigit Küçük; Vania Santillana; Aaron King; Hande Küçük-McGinty (AAAI, 2025)

OLIVE: Ontology Learning With Integrated Vector Embeddings. - Yinglun Zhang; Aryan Singh Dalal; Caleb Martin; Srikar Reddy Gadusu; Hande Küçük-McGinty (Appl. Ontology, 2025)

Building Knowledge Graphs Towards a Global Food Systems Datahub. - Nirmal Gelal; Aastha Gautam; Sanaz Saki Norouzi; Nico Giordano; Claudio Dias da Silva Jr; Jean Ribert Francois; Kelsey Andersen Onofre; Katherine Nelson; Stacy L. Hutchinson; Xiaomao Lin; Stephen Welch; Romulo Lollato; et al. (CoRR, 2025)

An Ontology for Representing Curriculum and Learning Material. - Antrea Christou; Chris Davis Jaldi; Joseph Zalewski; Hande Küçük-McGinty; Pascal Hitzler; Cogan Shimizu (CoRR, 2025)

T-TExTS (Teaching Text Expansion for Teacher Scaffolding): Enhancing Text Selection in High School Literature through Knowledge Graph-Based Recommendation. - Nirmal Gelal; Chloe Snow; Ambyr Rios; Hande Küçük-McGinty (CoRR, 2025)

Generating Reliable Adverse event Profiles for Health through Automated Integrated Data (GRAPH-AID): A Semi-Automated Ontology Building Approach. - Srikar Reddy Gadusu; Larry Callahan; Samir Lababidi; Arunasri Nishtala; Sophia Healey; Hande McGinty (CoRR, 2025)