The Human OligoGenome Resource: a database of oligonucleotide capture probes for resequencing target regions across the human genome. - Daniel E. Newburger; Georges Natsoulis; Sue Grimes; John M. Bell; Ronald W. Davis; Serafim Batzoglou; Hanlee P. Ji (Nucleic Acids Res., 2012)

MendeLIMS: a web-based laboratory information management system for clinical genome sequencing. - Susan M. Grimes; Hanlee P. Ji (BMC Bioinform., 2014)

Modeling the Evolution of Ploidy in a Resource Restricted Environment. - Gregory Kimmel; Jill S. Barnholtz-Sloan; Hanlee P. Ji; Philipp M. Altrock; Noemi Andor (ISMCO, 2019)

Structural variant analysis for linked-read sequencing data with gemtools. - Stephanie U. Greer; Hanlee P. Ji (Bioinform., 2019)

KmerKeys: a web resource for searching indexed genome assemblies and variants. - Dmitri S. Pavlichin; Hojoon Lee; Stephanie U. Greer; Susan M. Grimes; Tsachy Weissman; Hanlee P. Ji (Nucleic Acids Res., 2022)