Augmenting nutritional metabolomics with a genome-scale metabolic model for assessment of diet intake. - Kowshika Sarker; Ruoqing Zhu; Hannah D. Holscher; ChengXiang Zhai (BCB, 2023)

Prior-guided longitudinal metabolomic analysis. - Kowshika Sarker; Ruoqing Zhu; Hannah Diane Holscher; ChengXiang Zhai (BIBM, 2024)

DiMB-RE: mining the scientific literature for diet-microbiome associations. - Gibong Hong; Veronica Hindle; Nadine M. Veasley; Hannah D. Holscher; Halil Kilicoglu (J. Am. Medical Informatics Assoc., 2025)