Deep protein representations enable recombinant protein expression prediction. - Hannah-Marie Martiny; José Juan Almagro Armenteros; Alexander Rosenberg Johansen; Jesper Salomon; Henrik Nielsen (Comput. Biol. Chem., 2021)

NetSolP: predicting protein solubility in Escherichia coli using language models. - Vineet Thumuluri; Hannah-Marie Martiny; José Juan Almagro Armenteros; Jesper Salomon; Henrik Nielsen; Alexander Rosenberg Johansen (Bioinform., 2022)

ARGprofiler - a pipeline for large-scale analysis of antimicrobial resistance genes and their flanking regions in metagenomic datasets. - Hannah-Marie Martiny; Nikiforos Pyrounakis; Thomas Nordahl Petersen; Oksana Lukjancenko; Frank Aarestrup; Philip T. L. C. Clausen; Patrick Munk (Bioinform., 2024)