Parameter inference for asynchronous logical networks using discrete time series. - Hannes Klarner; Heike Siebert; Alexander Bockmayr (CMSB, 2011)

Parameter Identification and Model Ranking of Thomas Networks. - Hannes Klarner; Adam Streck; David Safránek; Juraj Kolcák; Heike Siebert (CMSB, 2012)

Time Series Dependent Analysis of Unparametrized Thomas Networks. - Hannes Klarner; Heike Siebert; Alexander Bockmayr (IEEE ACM Trans. Comput. Biol. Bioinform., 2012)

Computing Symbolic Steady States of Boolean Networks. - Hannes Klarner; Alexander Bockmayr; Heike Siebert (ACRI, 2014)

Model Integration and Crosstalk Analysis of Logical Regulatory Networks. - Kirsten Thobe; Adam Streck; Hannes Klarner; Heike Siebert (CMSB, 2014)

Computing maximal and minimal trap spaces of Boolean networks. - Hannes Klarner; Alexander Bockmayr; Heike Siebert (Nat. Comput., 2015)

Contributions to the Analysis of Qualitative Models of Regulatory Networks. - Hannes Klarner (2015)

PyBoolNet: a python package for the generation, analysis and visualization of boolean networks. - Hannes Klarner; Adam Streck; Heike Siebert (Bioinform., 2017)

Erratum to: Computing maximal and minimal trap spaces of Boolean networks. - Hannes Klarner; Alexander Bockmayr; Heike Siebert (Nat. Comput., 2018)

Basins of Attraction, Commitment Sets, and Phenotypes of Boolean Networks. - Hannes Klarner; Frederike Heinitz; Sarah Nee; Heike Siebert (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)