Comparing Genetic Programming and Evolution Strategies on Inferring Gene Regulatory Networks. - Felix Streichert; Hannes Planatscher; Christian Spieth; Holger Ulmer; Andreas Zell (GECCO (1), 2004)

Benchmarking evolutionary algorithms on convenience kinetics modelsof the valine and leucine biosynthesis in C. glutamicum. - Andreas Dräger; Marcel Kronfeld; Jochen Supper; Hannes Planatscher; Jørgen B. Magnus; Marco Oldiges; Andreas Zell (IEEE Congress on Evolutionary Computation, 2007)

Comparing various evolutionary algorithms on the parameter optimization of the valine and leucine biosynthesis in corynebacterium glutamicum. - Andreas Dräger; Jochen Supper; Hannes Planatscher; Jørgen B. Magnus; Marco Oldiges; Andreas Zell (IEEE Congress on Evolutionary Computation, 2007)

SBML2LATEX: Conversion of SBML files into human-readable reports. - Andreas Dräger; Hannes Planatscher; Dieudonné Motsou Wouamba; Adrian Schröder; Michael Hucka; Lukas Endler; Martin Golebiewski; Wolfgang Müller 001; Andreas Zell (Bioinform., 2009)

Modeling metabolic networks in C. glutamicum: a comparison of rate laws in combination with various parameter optimization strategies. - Andreas Dräger; Marcel Kronfeld; Michael J. Ziller; Jochen Supper; Hannes Planatscher; Jørgen B. Magnus; Marco Oldiges; Oliver Kohlbacher; Andreas Zell (BMC Syst. Biol., 2009)

BowTieBuilder: modeling signal transduction pathways. - Jochen Supper; Lucía Spangenberg; Hannes Planatscher; Andreas Dräger; Adrian Schröder; Andreas Zell (BMC Syst. Biol., 2009)

The EvA2 Optimization Framework. - Marcel Kronfeld; Hannes Planatscher; Andreas Zell (LION, 2010)

Optimal selection of epitopes for TXP-immunoaffinity mass spectrometry. - Hannes Planatscher; Jochen Supper; Oliver Poetz; Dieter Stoll; Thomas Joos; Markus F. Templin; Andreas Zell (Algorithms Mol. Biol., 2010)

Automatic pharmacophore model generation using weighted substructure assignments. - Andreas Jahn 001; Hannes Planatscher; Georg Hinselmann; Nikolas Fechner; Andreas Zell (J. Cheminformatics, 2010)

The systems biology simulation core algorithm. - Roland Keller; Alexander Dörr; Akito Tabira; Akira Funahashi; Michael J. Ziller; Richard R. Adams; Nicolas Rodriguez 001; Nicolas Le Novère; Noriko Hiroi; Hannes Planatscher; Andreas Zell; Andreas Dräger (BMC Syst. Biol., 2013)

Identification of short terminal motifs enriched by antibodies using peptide mass fingerprinting. - Hannes Planatscher; Frederik Weiß; David Eisen; B. H. J. van den Berg; Andreas Zell; Thomas Joos; Oliver Poetz (Bioinform., 2014)

Combinatorial optimization for affinity proteomics - Hannes Planatscher (2016)

The systems biology simulation core library. - Hemil Panchiwala; Shalin Shah; Hannes Planatscher; Mykola Zakharchuk; Matthias König 003; Andreas Dräger (Bioinform., 2022)