Algorithms for Some String Matching Problems Arising in Molecular Genetics. - Hannu Peltola; Hans Söderlund; Jorma Tarhio; Esko Ukkonen (IFIP Congress, 1983)

SEQAID: a DNA sequence assembling program based on a mathematical model. - Hannu Peltola; Hans Söderlund; Esko Ukkonen (Nucleic Acids Res., 1984)

Algorithms for the search of amino acid patterns in nucleic acid sequences. - Hannu Peltola; Hans Söderlund; Esko Ukkonen (Nucleic Acids Res., 1986)

String Matching in the DNA Alphabet. - Jorma Tarhio; Hannu Peltola (Softw. Pract. Exp., 1997)

Alternative Algorithms for Bit-Parallel String Matching. - Hannu Peltola; Jorma Tarhio (SPIRE, 2003)

On String Matching in Chunked Texts. - Hannu Peltola; Jorma Tarhio (CIAA, 2007)

Comparison of Exact String Matching Algorithms for Biological Sequences. - Petri Kalsi; Hannu Peltola; Jorma Tarhio (BIRD, 2008)

Speeding Up Pattern Matching by Text Sampling. - Francisco Claude; Gonzalo Navarro 001; Hannu Peltola; Leena Salmela; Jorma Tarhio (SPIRE, 2008)

Tuning BNDM with q-Grams. - Branislav Durian; Jan Holub 001; Hannu Peltola; Jorma Tarhio (ALENEX, 2009)

Bit-Parallel Search Algorithms for Long Patterns. - Branislav Durian; Hannu Peltola; Leena Salmela; Jorma Tarhio (SEA, 2010)

Improving practical exact string matching. - Branislav Durian; Jan Holub 001; Hannu Peltola; Jorma Tarhio (Inf. Process. Lett., 2010)

Variations of Forward-SBNDM. - Hannu Peltola; Jorma Tarhio (Stringology, 2011)

String matching with alphabet sampling. - Francisco Claude; Gonzalo Navarro 001; Hannu Peltola; Leena Salmela; Jorma Tarhio (J. Discrete Algorithms, 2012)

Towards Faster String Matching ; Nopeampaa merkkijononhakua. - Hannu Peltola (2013)

Improved Two-Way Bit-parallel Search. - Branislav Durian; Tamanna Chhabra; Sukhpal Singh Ghuman; Tommi Hirvola; Hannu Peltola; Jorma Tarhio (Stringology, 2014)

String matching with lookahead. - Hannu Peltola; Jorma Tarhio (Discret. Appl. Math., 2014)

Pitfalls of Algorithm Comparison. - Waltteri Pakalén; Hannu Peltola; Jorma Tarhio; Bruce W. Watson (Stringology, 2021)