Modified MM2 scheme for computation of O‒C‒N-containing systems. - Hanoch Senderowitz; Pinchas Aped; Benzion Fuchs (J. Comput. Chem., 1993)

Sampling potential energy surface of glycyl glycine peptide: Comparison of Metropolis Monte Carlo and stochastic dynamics. - Hanoch Senderowitz; W. Clark Still (J. Comput. Chem., 1998)

MC(JBW): Simple but smart Monte Carlo algorithm for free energy simulations of multiconformational molecules. - Hanoch Senderowitz; W. Clark Still (J. Comput. Chem., 1998)

SeleX-CS: A New Consensus Scoring Algorithm for Hit Discovery and Lead Optimization. - Shay Bar-Haim; Ayelet Aharon; Tal Ben-Moshe; Yael Marantz; Hanoch Senderowitz (J. Chem. Inf. Model., 2009)

Bioactive Conformational Biasing: A New Method for Focusing Conformational Ensembles on Bioactive-Like Conformers. - Boaz Musafia; Hanoch Senderowitz (J. Chem. Inf. Model., 2009)

Quantitative structure-activity relationship analysis of β-amyloid aggregation inhibitors. - Shiri Stempler; Michal Levy-Sakin; Anat Frydman-Marom; Yaniv Amir; Roni Scherzer-Attali; Ludmila Buzhansky; Ehud Gazit; Hanoch Senderowitz (J. Comput. Aided Mol. Des., 2011)

Docking Studies on DNA Intercalators. - Yocheved Gilad; Hanoch Senderowitz (J. Chem. Inf. Model., 2014)

Optimization of Molecular Representativeness. - Abraham Yosipof; Hanoch Senderowitz (J. Chem. Inf. Model., 2014)

k-Nearest neighbors optimization-based outlier removal. - Abraham Yosipof; Hanoch Senderowitz (J. Comput. Chem., 2015)

A reliable computational workflow for the selection of optimal screening libraries. - Yocheved Gilad; Katalin Nadassy; Hanoch Senderowitz (J. Cheminformatics, 2015)

Toward Focusing Conformational Ensembles on Bioactive Conformations: A Molecular Mechanics/Quantum Mechanics Study. - Hannah H. Avgy-David; Hanoch Senderowitz (J. Chem. Inf. Model., 2015)

A Multi-Objective Genetic Algorithm for Outlier Removal. - Oren E. Nahum; Abraham Yosipof; Hanoch Senderowitz (J. Chem. Inf. Model., 2015)

REMD Simulations Reveal the Dynamic Profile and Mechanism of Action of Deleterious, Rescuing, and Stabilizing Perturbations to NBD1 from CFTR. - Michael Zhenin; Efrat Noy; Hanoch Senderowitz (J. Chem. Inf. Model., 2015)

RANdom SAmple Consensus (RANSAC) algorithm for material-informatics: application to photovoltaic solar cells. - Omer Kaspi; Abraham Yosipof; Hanoch Senderowitz (J. Cheminformatics, 2017)

Molecular Dynamics Flexible Fitting Simulations Identify New Models of the Closed State of the Cystic Fibrosis Transmembrane Conductance Regulator Protein. - Luba Simhaev; Nael A. McCarty; Robert C. Ford; Hanoch Senderowitz (J. Chem. Inf. Model., 2017)

Rescoring of docking poses under Occam's Razor: are there simpler solutions? - Michael Zhenin; Malkeet Singh Bahia; Gilles Marcou; Alexandre Varnek; Hanoch Senderowitz; Dragos Horvath (J. Comput. Aided Mol. Des., 2018)

Visualization of Solar Cell Library Space by Dimensionality Reduction Methods. - Omer Kaspi; Abraham Yosipof; Hanoch Senderowitz (J. Chem. Inf. Model., 2018)

Materials Informatics. - Hanoch Senderowitz; Alexander Tropsha (J. Chem. Inf. Model., 2018)

Application of Materials Informatics Tools to the Analysis of Combinatorial Libraries of All Metal-Oxides Photovoltaic Cells. - Hanoch Senderowitz; Abraham Yosipof; Omer Kaspi (ICANN (Workshop), 2019)

Stability Prediction for Mutations in the Cytosolic Domains of Cystic Fibrosis Transmembrane Conductance Regulator. - Malkeet Singh Bahia; Netaly Khazanov; Qingxian Zhou; Zhengrong Yang; Chi Wang; Jeong S. Hong; Andras Rab; Eric Sorscher; Christel Brouillette; John F. Hunt; Hanoch Senderowitz (J. Chem. Inf. Model., 2021)

Toward Developing Techniques─Agnostic Machine Learning Classification Models for Forensically Relevant Glass Fragments. - Omer Kaspi; Osnat Israelsohn-Azulay; Zidon Yigal; Hila Rosengarten; Matea Krmpotic; Sabrina Gouasmia; Iva Bogdanovic-Radovic; Pasi Jalkanen; Anna Liski; Kenichiro Mizohata; Jyrki Räisänen; Zsolt Kasztovszky; et al. (J. Chem. Inf. Model., 2023)

Effects of Point Mutations on the Thermal Stability of the NBD1 Domain of hCFTR. - Lior Lublin; Hanoch Senderowitz (J. Chem. Inf. Model., 2025)