MatrixPlot: visualizing sequence constraints. - Jan Gorodkin; Hans Henrik Stærfeldt; Ole Lund; Søren Brunak (Bioinform., 1999)

Bias of Purine Stretches in Sequenced Chromosomes. - David Ussery; Dikeos Mario Soumpasis; Søren Brunak; Hans Henrik Stærfeldt; Peder Worning; Anders Krogh (Comput. Chem., 2002)

Prediction of human protein function according to Gene Ontology categories. - Lars Juhl Jensen; Ramneek Gupta; Hans Henrik Stærfeldt; Søren Brunak (Bioinform., 2003)

FeatureMap3D - a tool to map protein features and sequence conservation onto homologous structures in the PDB. - Rasmus Wernersson; Kristoffer Rapacki; Hans Henrik Stærfeldt; Peter Wad Sackett; Anne Mølgaard (Nucleic Acids Res., 2006)

The Genome Atlas Resource. - Matloob Qureshi; Eva Rotenberg; Hans Henrik Stærfeldt; Lena Hansson; David Wayne Ussery (CSBio, 2010)

A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts. - David Westergaard; Hans Henrik Stærfeldt; Christian Tønsberg; Lars Juhl Jensen; Søren Brunak (PLoS Comput. Biol., 2018)