Midsagittal surface measurement of the head: an assessment of craniofacial asymmetry. - Gary E. Christensen; Hans J. Johnson; Tron A. Darvann; Nuno V. Hermann; Jeffrey L. Marsh (Image Processing, 1999)

Synthesizing average 3D anatomical shapes using deformable templates. - Gary E. Christensen; Hans J. Johnson; John W. Haller; Jenny Melloy; Michael W. Vannier; Jeffrey L. Marsh (Image Processing, 1999)

Validation of probabilistic anatomical shape atlases. - Hans J. Johnson; Gary E. Christensen; Jeffrey L. Marsh; Michael W. Vannier (Image Processing, 2000)

Landmark and Intensity-Based, Consistent Thin-Plate Spline Image Registration. - Hans J. Johnson; Gary E. Christensen (IPMI, 2001)

Evaluating template bias when synthesizing population averages. - Blake L. Carlson; Gary E. Christensen; Hans J. Johnson; Michael W. Vannier (Image Processing, 2001)

Consistent Image Registration. - Gary E. Christensen; Hans J. Johnson (IEEE Trans. Medical Imaging, 2001)

Consistent Landmark and Intensity-based Image Registration. - Hans J. Johnson; Gary E. Christensen (IEEE Trans. Medical Imaging, 2002)

Invertibility and transitivity analysis for nonrigid image registration. - Gary E. Christensen; Hans J. Johnson (J. Electronic Imaging, 2003)

Subcortical, cerebellar, and magnetic resonance based consistent brain image registration. - Vincent A. Magnotta; Henry Jeremy Bockholt; Hans J. Johnson; Gary E. Christensen; Nancy C. Andreasen (NeuroImage, 2003)

Retrospective Evaluation of Inter-subject Brain Registration. - Pierre Hellier; Christian Barillot; Isabelle Corouge; Bernard Gibaud; Georges Le Goualher; D. Louis Collins; Alan C. Evans; Grégoire Malandain; Nicholas Ayache; Gary E. Christensen; Hans J. Johnson (IEEE Trans. Medical Imaging, 2003)

Automated brain segmentation using neural networks. - Stephanie Powell; Vincent Magnotta; Hans J. Johnson; Nancy Andreasen (Image Processing, 2006)

Synthesizing average 3D anatomical shapes. - Gary E. Christensen; Hans J. Johnson; Michael W. Vannier (NeuroImage, 2006)

Registration and machine learning-based automated segmentation of subcortical and cerebellar brain structures. - Stephanie Powell; Vincent Magnotta; Hans J. Johnson; Vamsi K. Jammalamadaka; Ronald Pierson; Nancy Andreasen (NeuroImage, 2008)

Maximize uniformity summation heuristic (MUSH): a highly accurate simple method for intracranial delineation. - Ronald Pierson; Gregory Harris; Hans J. Johnson; Steve Dunn; Vincent A. Magnotta (Image Processing, 2009)

Multi-structure segmentation of multi-modal brain images using artificial neural networks. - Eun Young Kim; Hans J. Johnson (Image Processing, 2010)

Fully automated analysis using BRAINS: AutoWorkup. - Ronald Pierson; Hans J. Johnson; Gregory Harris; Helen Keefe; Jane S. Paulsen; Nancy Andreasen; Vincent Magnotta (NeuroImage, 2011)

A Unified Image Registration Framework for ITK. - Brian B. Avants; Nicholas J. Tustison; Gang Song; Baohua Wu; Michael Stauffer; Matthew McCormick 001; Hans J. Johnson; James C. Gee (WBIR, 2012)

MultiCenter Reliability of Diffusion Tensor Imaging. - Vincent Magnotta; Joy T. Matsui; Dawei Liu; Hans J. Johnson; Jeffrey D. Long; Bradley D. Bolster Jr.; Bryon A. Mueller; Kelvin O. Lim; Susumu Mori; Karl G. Helmer; Jessica A. Turner; Sarah A. J. Reading; et al. (Brain Connect., 2012)

Development of a novel constellation based landmark detection algorithm. - Ali Ghayoor; Jatin G. Vaidya; Hans J. Johnson (Image Processing, 2013)

UNC-Utah NA-MIC DTI framework: atlas based fiber tract analysis with application to a study of nicotine smoking addiction. - Audrey R. Verde; Jean-Baptiste Berger; Aditya Gupta; Mahshid Farzinfar; Adrien Kaiser; Vicki W. Chanon; Charlotte A. Boettiger; Hans J. Johnson; Joy T. Matsui; Anuja Sharma; Casey Goodlett; Yundi Shi; et al. (Image Processing, 2013)

Robust multi-site MR data processing: iterative optimization of bias correction, tissue classification, and registration. - Eun Young Kim; Hans J. Johnson (Frontiers Neuroinformatics, 2013)

UNC-Utah NA-MIC framework for DTI fiber tract analysis. - Audrey R. Verde; François Budin; Jean-Baptiste Berger; Aditya Gupta; Mahshid Farzinfar; Adrien Kaiser; Mihye Ahn; Hans J. Johnson; Joy T. Matsui; Heather Cody Hazlett; Anuja Sharma; Casey Goodlett; et al. (Frontiers Neuroinformatics, 2013)

Diffeomorphic Shape Trajectories for Improved Longitudinal Segmentation and Statistics. - Prasanna Muralidharan; James Fishbaugh; Hans J. Johnson; Stanley Durrleman; Jane S. Paulsen; Guido Gerig; P. Thomas Fletcher (MICCAI (3), 2014)

DTIPrep: quality control of diffusion-weighted images. - Ipek Oguz; Mahshid Farzinfar; Joy T. Matsui; François Budin; Zhexing Liu; Guido Gerig; Hans J. Johnson; Martin Andreas Styner (Frontiers Neuroinformatics, 2014)

Correction of inter-scanner and within-subject variance in structural MRI based automated diagnosing. - Daniel Kostro; Ahmed Abdulkadir; Alexandra Durr; Raymund Roos; Blair R. Leavitt; Hans J. Johnson; David M. Cash; Sarah J. Tabrizi; Rachael I. Scahill; Olaf Ronneberger; Stefan Klöppel (NeuroImage, 2014)

Efficient and Extensible Workflow: Reliable Whole Brain Segmentation for Large-Scale, Multi-center Longitudinal Human MRI Analysis Using High Performance/Throughput Computing Resources. - Regina E. Y. Kim; Peg Nopoulos; Jane S. Paulsen; Hans J. Johnson (CLIP@MICCAI, 2015)

Neuroinformatics and the The Insight ToolKit. - Brian B. Avants; Hans J. Johnson; Nicholas J. Tustison (Frontiers Neuroinformatics, 2015)

Population Shape Collapse in Large Deformation Registration of MR Brain Images. - Wei Shao 008; Gary E. Christensen; Hans J. Johnson; Joo Hyun Song; Oguz C. Durumeric; Casey P. Johnson; Joseph J. Shaffer; Vincent A. Magnotta; Jess G. Fiedorowicz; John A. Wemmie (CVPR Workshops, 2016)

Bayesian covariate selection in mixed-effects models for longitudinal shape analysis. - Prasanna Muralidharan; James Fishbaugh; Eun Young Kim; Hans J. Johnson; Jane S. Paulsen; Guido Gerig; P. Thomas Fletcher (ISBI, 2016)

Comparative study of multimodal intra-subject image registration methods on a publicly available database. - Mohammad Saleh Miri; Ali Ghayoor; Hans J. Johnson; Milan Sonka (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2016)

Tissue classification of large-scale multi-site MR data using fuzzy k-nearest neighbor method. - Ali Ghayoor; Jane S. Paulsen; Regina E. Y. Kim; Hans J. Johnson (Image Processing, 2016)

An Open-Source Label Atlas Correction Tool and Preliminary Results on Huntingtons Disease Whole-Brain MRI Atlases. - Jessica L. Forbes; Regina E. Y. Kim; Jane S. Paulsen; Hans J. Johnson (Frontiers Neuroinformatics, 2016)

Nipype: a flexible, lightweight and extensible neuroimaging data processing framework in Python. 0.12.0-rc1. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher Burns 002; Erik Ziegler; Basile Pinsard; Cindee M. Madison; Michael L. Waskom; David Gage Ellis; Dav Clark; Michael Dayan; Alexandre Manhães-Savio; Michael Philipp Notter; et al. (Zenodo, 2016)

Subject-specific longitudinal shape analysis by coupling spatiotemporal shape modeling with medial analysis. - Sungmin Hong; James Fishbaugh; Morteza Rezanejad; Kaleem Siddiqi; Hans J. Johnson; Jane S. Paulsen; Eun Young Kim; Guido Gerig (Image Processing, 2017)

Brute-force Missing Data Extreme Learning Machine for Predicting Huntington's Disease. - Anton Akusok; Emil Eirola; Kaj-Mikael Björk; Yoan Miché; Hans J. Johnson; Amaury Lendasse (PETRA, 2017)

Nipype: a flexible, lightweight and extensible neuroimaging data processing framework in Python. 0.13.0. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher Burns 002; Erik Ziegler; Basile Pinsard; Cindee M. Madison; Michael L. Waskom; David Gage Ellis; Dav Clark; Jason Wong; Michael Dayan; Alexandre Manhães-Savio; et al. (Zenodo, 2017)

Nipype: a flexible, lightweight and extensible neuroimaging data processing framework in Python. 0.13.1. - Krzysztof J. Gorgolewski; Oscar Esteban; David Gage Ellis; Michael Philipp Notter; Erik Ziegler; Hans J. Johnson; Carlo Hämäläinen; Benjamin Yvernault; Christopher Burns 002; Alexandre Manhães-Savio; Dorota Jarecka; Christopher J. Markiewicz; et al. (Zenodo, 2017)

nipy/nipype: 0.14.0-rc1. - Krzysztof J. Gorgolewski; Oscar Esteban; David Gage Ellis; Michael Philipp Notter; Erik Ziegler; Hans J. Johnson; Carlo Hämäläinen; Benjamin Yvernault; Christopher Burns 002; Alexandre Manhães-Savio; Dorota Jarecka; Christopher J. Markiewicz; et al. (Zenodo, 2017)

nipy/nipype: 0.14.0-rc1. - Krzysztof J. Gorgolewski; Oscar Esteban; David Gage Ellis; Michael Philipp Notter; Erik Ziegler; Hans J. Johnson; Carlo Hämäläinen; Benjamin Yvernault; Christopher Burns 002; Alexandre Manhães-Savio; Dorota Jarecka; Christopher J. Markiewicz; et al. (Zenodo, 2017)

nipy/nipype: 0.14.0. - Krzysztof J. Gorgolewski; Oscar Esteban; David Gage Ellis; Michael Philipp Notter; Erik Ziegler; Hans J. Johnson; Carlo Hämäläinen; Benjamin Yvernault; Christopher J. Markiewicz; Christopher Burns 002; Alexandre Manhães-Savio; Dorota Jarecka; et al. (Zenodo, 2017)

ELM-SOM: A Continuous Self-Organizing Map for Visualization. - Renjie Hu; Venous Roshdibenam; Hans J. Johnson; Emil Eirola; Anton Akusok; Yoan Miche; Kaj-Mikael Björk; Amaury Lendasse (IJCNN, 2018)

Whole-Brain Connectivity in a Large Study of Huntington's Disease Gene Mutation Carriers and Healthy Controls. - Flor A. Espinoza; Jessica A. Turner; Victor M. Vergara; Robyn L. Miller; Eva Mennigen; Jingyu Liu 001; Maria B. Misiura; Jennifer Ciarochi; Hans J. Johnson; Jeffrey D. Long; Henry Jeremy Bockholt; Vincent A. Magnotta; et al. (Brain Connect., 2018)

SimpleITK Image-Analysis Notebooks: a Collaborative Environment for Education and Reproducible Research. - Ziv Yaniv; Bradley C. Lowekamp; Hans J. Johnson; Richard Beare (J. Digit. Imaging, 2018)

Robust automated constellation-based landmark detection in human brain imaging. - Ali Ghayoor; Jatin G. Vaidya; Hans J. Johnson (NeuroImage, 2018)

nipy/nipype: Nipype - v1.0.0. - Krzysztof J. Gorgolewski; Oscar Esteban; Erik Ziegler; Michael Philipp Notter; Christopher Burns 002; David Gage Ellis; Hans J. Johnson; Alexandre Manhães-Savio; Carlo Hämäläinen; Dorota Jarecka; Benjamin Yvernault; Christopher J. Markiewicz; et al. (Zenodo, 2018)

nipy/nipype: 1.0.1. - Krzysztof J. Gorgolewski; Oscar Esteban; Erik Ziegler; David Gage Ellis; Michael Philipp Notter; Christopher J. Markiewicz; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Dorota Jarecka; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2018)

nipy/nipype: 1.0.2. - Krzysztof J. Gorgolewski; Oscar Esteban; Erik Ziegler; David Gage Ellis; Christopher J. Markiewicz; Michael Philipp Notter; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Dorota Jarecka; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2018)

nipy/nipype: Nipype 1.0.3. - Krzysztof J. Gorgolewski; Oscar Esteban; Erik Ziegler; Christopher J. Markiewicz; David Gage Ellis; Michael Philipp Notter; Dorota Jarecka; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2018)

nipy/nipype: 1.0.4. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Michael Philipp Notter; Dorota Jarecka; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2018)

nipy/nipype: 1.0.4. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Michael Philipp Notter; Dorota Jarecka; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2018)

nipy/nipype: Nipype 1.1.0. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Michael Philipp Notter; Dorota Jarecka; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2018)

nipy/nipype: 1.1.1. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Michael Philipp Notter; Hans J. Johnson; Dorota Jarecka; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2018)

nipy/nipype: 1.1.2. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Michael Philipp Notter; Hans J. Johnson; Dorota Jarecka; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2018)

nipy/nipype: 1.1.3. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Michael Philipp Notter; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2018)

nipy/nipype: 1.1.4. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Michael Philipp Notter; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hamalainen; Benjamin Yvernault; et al. (Zenodo, 2018)

nipy/nipype: 1.1.5. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Michael Philipp Notter; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2018)

nipy/nipype: 1.1.6. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Michael Philipp Notter; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2018)

nipy/nipype: 1.1.7. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Michael Philipp Notter; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2018)

Ensemble Modeling of Neurocognitive Performance Using MRI-Derived Brain Structure Volumes. - Leo Brueggeman; Tanner Koomar; Yongchao Huang; Brady Hoskins; Tien Tong; James Kent; Ethan Bahl; Charles E. Johnson; Alexander Powers; Douglas R. Langbehn; Jatin G. Vaidya; Hans J. Johnson; et al. (ABCD-NP@MICCAI, 2019)

Correction to: SimpleITK Image-Analysis Notebooks: a Collaborative Environment for Education and Reproducible Research. - Ziv Yaniv; Bradley C. Lowekamp; Hans J. Johnson; Richard Beare (J. Digit. Imaging, 2019)

nipy/nipype: 1.1.8. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Michael Philipp Notter; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2019)

nipy/nipype: 1.1.9. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Michael Philipp Notter; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2019)

nipy/nipype: 1.2.0. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Michael Philipp Notter; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2019)

nipy/nipype: 1.2.1. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Hans J. Johnson; Michael Philipp Notter; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2019)

nipy/nipype: 1.2.3. - Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Hans J. Johnson; Michael Philipp Notter; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; Taylor Salo; et al. (Zenodo, 2019)

nipy/nipype: 1.2.2. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Hans J. Johnson; Michael Philipp Notter; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2019)

nipy/nipype: 1.2.2. - Krzysztof J. Gorgolewski; Oscar Esteban; Christopher J. Markiewicz; Erik Ziegler; David Gage Ellis; Dorota Jarecka; Hans J. Johnson; Michael Philipp Notter; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Benjamin Yvernault; et al. (Zenodo, 2019)

nipy/nipype: 1.3.0-rc1. - Oscar Esteban; Christopher J. Markiewicz; Dorota Jarecka; Erik Ziegler; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Michael Philipp Notter; Benjamin Yvernault; David Gage Ellis; Taylor Salo; et al. (Zenodo, 2019)

nipy/nipype: 1.3.0. - Oscar Esteban; Christopher J. Markiewicz; Dorota Jarecka; Erik Ziegler; Hans J. Johnson; Christopher Burns 002; Alexandre Manhães-Savio; Carlo Hämäläinen; Michael Philipp Notter; Benjamin Yvernault; David Gage Ellis; Taylor Salo; et al. (Zenodo, 2019)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Yaroslav O. Halchenko; Taylor Salo; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; Dmitry Petrov; Hans J. Johnson; Valérie Hayot-Sasson; et al. (Zenodo, 2019)

nipy/nipype: 1.4.0. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Hans J. Johnson; Erik Ziegler; Alexandre Manhães-Savio; Dorota Jarecka; David Gage Ellis; Benjamin Yvernault; Carlo Hämäläinen; Michael Philipp Notter; Taylor Salo; et al. (Zenodo, 2019)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Yaroslav O. Halchenko; Taylor Salo; Quinten McNamara; Krista Destasio; Jean-Baptiste Poline; Hans J. Johnson; Dmitry Petrov; Valérie Hayot-Sasson; et al. (Zenodo, 2019)

Tensor-Based Grading: A Novel Patch-Based Grading Approach for the Analysis Of Deformation Fields in Huntington's Disease. - Kilian Hett; Hans J. Johnson; Pierrick Coupé; Jane S. Paulsen; Jeffrey D. Long; Ipek Oguz (ISBI, 2020)

Robust Automatic Multiple Landmark Detection. - Arjit Jain; Alexander Powers; Hans J. Johnson (ISBI, 2020)

Patch-Based Abnormality Maps for Improved Deep Learning-Based Classification of Huntington's Disease. - Kilian Hett; Rémi Giraud; Hans J. Johnson; Jane S. Paulsen; Jeffrey D. Long; Ipek Oguz (MICCAI (7), 2020)

Generalizing MRI Subcortical Segmentation to Neurodegeneration. - Hao Li; Huahong Zhang; Dewei Hu; Hans J. Johnson; Jeffrey D. Long; Jane S. Paulsen; Ipek Oguz (MLCN/RNO-AI@MICCAI, 2020)

A predictive model for kidney transplant graft survival using machine learning. - Eric S. Pahl; W. Nick Street; Hans J. Johnson; Alan I. Reed (CoRR, 2020)

nipy/nipype: 1.4.1. - Oscar Esteban; Christopher J. Markiewicz; Hans J. Johnson; Erik Ziegler; Alexandre Manhães-Savio; Dorota Jarecka; Christopher Burns 002; David Gage Ellis; Carlo Hämäläinen; Michael Philipp Notter; Benjamin Yvernault; Taylor Salo; et al. (Zenodo, 2020)

nipy/nipype: 1.4.2. - Oscar Esteban; Christopher J. Markiewicz; Hans J. Johnson; Erik Ziegler; Alexandre Manhães-Savio; Dorota Jarecka; Christopher Burns 002; David Gage Ellis; Carlo Hämäläinen; Michael Philipp Notter; Benjamin Yvernault; Taylor Salo; et al. (Zenodo, 2020)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Yaroslav O. Halchenko; Taylor Salo; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; Hans J. Johnson; Oscar Esteban; Dmitry Petrov; et al. (Zenodo, 2020)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Yaroslav O. Halchenko; Taylor Salo; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; Hans J. Johnson; Oscar Esteban; Dmitry Petrov; et al. (Zenodo, 2020)

nipy/nipype: 1.5.0. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2020)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; Hans J. Johnson; Oscar Esteban; Dmitry Petrov; et al. (Zenodo, 2020)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; Hans J. Johnson; Oscar Esteban; Dmitry Petrov; et al. (Zenodo, 2020)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; Hans J. Johnson; Oscar Esteban; Dmitry Petrov; et al. (Zenodo, 2020)

nipy/nipype: 1.5.1. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2020)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; Hans J. Johnson; Oscar Esteban; Dmitry Petrov; et al. (Zenodo, 2020)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; Hans J. Johnson; Oscar Esteban; Dmitry Petrov; et al. (Zenodo, 2020)

Longitudinal subcortical segmentation with deep learning. - Hao Li; Huahong Zhang; Hans J. Johnson; Jeffrey D. Long; Jane S. Paulsen; Ipek Oguz (Image Processing, 2021)

MRI subcortical segmentation in neurodegeneration with cascaded 3D CNNs. - Hao Li; Huahong Zhang; Hans J. Johnson; Jeffrey D. Long; Jane S. Paulsen; Ipek Oguz (Image Processing, 2021)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; Hans J. Johnson; Oscar Esteban; Dmitry Petrov; et al. (Zenodo, 2021)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; Hans J. Johnson; Oscar Esteban; Dmitry Petrov; et al. (Zenodo, 2021)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; Hans J. Johnson; Oscar Esteban; Dmitry Petrov; et al. (Zenodo, 2021)

nipy/nipype: 1.7.0. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2021)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; Hans J. Johnson; Oscar Esteban; Evgenii Kalenkovich; et al. (Zenodo, 2021)

Self-supervised Test-Time Adaptation for Medical Image Segmentation. - Hao Li; Han Liu; Dewei Hu; Jiacheng Wang 007; Hans J. Johnson; Omar Sherbini; Francesco Gavazzi; Russell D'Aiello; Adeline Vanderver; Jeffrey D. Long; Jane S. Paulsen; Ipek Oguz (MLCN@MICCAI, 2022)

Multi-agent reinforcement learning pipeline for anatomical landmark detection in minipigs. - Michal Brzus; Alexander B. Powers; Kevin Knoernschild; Jessica C. Sieren; Hans J. Johnson (Image Processing, 2022)

Human brain extraction with deep learning. - Hao Li; Qibang Zhu; Dewei Hu; Manasvi R. Gunnala; Hans J. Johnson; Omar Sherbini; Francesco Gavazzi; Russell D'Aiello; Adeline Vanderver; Jeffrey D. Long; Jane S. Paulsen; Ipek Oguz (Image Processing, 2022)

MONAI: An open-source framework for deep learning in healthcare. - M. Jorge Cardoso; Wenqi Li 001; Richard Brown 004; Nic Ma; Eric Kerfoot; Yiheng Wang; Benjamin Murray; Andriy Myronenko; Can Zhao 001; Dong Yang 005; Vishwesh Nath; Yufan He; et al. (CoRR, 2022)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; Hans J. Johnson; Oscar Esteban; Evgenii Kalenkovich; et al. (Zenodo, 2022)

nipy/nipype: 1.7.1. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2022)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; Hans J. Johnson; Oscar Esteban; Evgenii Kalenkovich; et al. (Zenodo, 2022)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; Hans J. Johnson; Oscar Esteban; Evgenii Kalenkovich; et al. (Zenodo, 2022)

nipy/nipype: 1.8.0. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2022)

nipy/nipype: 1.8.1. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2022)

nipy/nipype: 1.8.3. - Oscar Esteban; Christopher J. Markiewicz; Christopher Burns 002; Mathias Goncalves; Dorota Jarecka; Erik Ziegler; Shoshana Berleant; David Gage Ellis; Basile Pinsard; Cindee Madison; Michael Waskom; Michael Philipp Notter; et al. (Zenodo, 2022)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Oscar Esteban; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; Hans J. Johnson; Rémi Gau; et al. (Zenodo, 2022)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Oscar Esteban; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; Rémi Gau; Hans J. Johnson; et al. (Zenodo, 2022)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Oscar Esteban; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; Rémi Gau; Hans J. Johnson; et al. (Zenodo, 2022)

Leveraging High-Quality Research Data for Ischemic Stroke Lesion Segmentation on Clinical Data. - Michal Brzus; Aaron D. Boes; Joel Bruss; Hans J. Johnson (ISBI, 2023)

Novel application of the attention mechanism on medical image harmonization. - Xing Yao; Ange Lou; Hao Li; Dewei Hu; Daiwei Lu; Han Liu; Jiacheng Wang 007; Zachary A. Stoebner; Hans J. Johnson; Jeffrey D. Long; Jane S. Paulsen; Ipek Oguz (Image Processing, 2023)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Oscar Esteban; Quinten McNamara; Krista DeStasio; Rémi Gau; Jean-Baptiste Poline; Hans J. Johnson; et al. (Zenodo, 2023)

PigSNIPE: Scalable Neuroimaging Processing Engine for Minipig MRI. - Michal Brzus; Kevin Knoernschild; Jessica C. Sieren; Hans J. Johnson (Algorithms, 2023)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Oscar Esteban; Rémi Gau; Dimitri Papadopoulos Orfanos; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; et al. (Zenodo, 2023)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Dimitri Papadopoulos Orfanos; Oscar Esteban; Rémi Gau; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; et al. (Zenodo, 2023)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Dimitri Papadopoulos Orfanos; Oscar Esteban; Rémi Gau; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; et al. (Zenodo, 2023)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Dimitri Papadopoulos Orfanos; Oscar Esteban; Rémi Gau; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; et al. (Zenodo, 2023)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Rémi Gau; Dimitri Papadopoulos Orfanos; Oscar Esteban; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; et al. (Zenodo, 2024)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Yaroslav O. Halchenko; Rémi Gau; Dimitri Papadopoulos Orfanos; Oscar Esteban; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; et al. (Zenodo, 2024)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Rémi Gau; Yaroslav O. Halchenko; Dimitri Papadopoulos Orfanos; Oscar Esteban; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; et al. (Zenodo, 2024)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Rémi Gau; Yaroslav O. Halchenko; Dimitri Papadopoulos Orfanos; Oscar Esteban; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; et al. (Zenodo, 2024)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Rémi Gau; Yaroslav O. Halchenko; Dimitri Papadopoulos Orfanos; Oscar Esteban; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; et al. (Zenodo, 2024)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Rémi Gau; Yaroslav O. Halchenko; Dimitri Papadopoulos Orfanos; Oscar Esteban; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; et al. (Zenodo, 2024)

PyBIDS: Python tools for BIDS datasets. - Tal Yarkoni; Christopher J. Markiewicz; Alejandro de la Vega; Krzysztof J. Gorgolewski; Taylor Salo; Rémi Gau; Yaroslav O. Halchenko; Dimitri Papadopoulos Orfanos; Oscar Esteban; Quinten McNamara; Krista DeStasio; Jean-Baptiste Poline; et al. (Zenodo, 2025)