METASIM: object-oriented modelling of cell regulation. - H. J. Stoffers; Erik L. L. Sonnhammer; G. J. Blommestijn; N. J. Raat; Hans V. Westerhoff (Comput. Appl. Biosci., 1992)

Meeting report-BioComplexity and the essence of the living state. - Oscar Somsen; Rienk van Grondelle; Hans V. Westerhoff (Complex., 1997)

Embodied intentional dynamics of bacterial behaviour. - Catholijn M. Jonker; Jacky L. Snoep; Jan Treur; Hans V. Westerhoff; Wouter C. A. Wijngaards (AAMAS, 2002)

Emergence and Its Place in Nature: A Case Study of Biochemical Networks. - Fred C. Boogerd; Frank J. Bruggeman; Robert C. Richardson; A. Stephan; Hans V. Westerhoff (Synth., 2005)

Noise Management by Molecular Networks. - Frank J. Bruggeman; Nils Blüthgen; Hans V. Westerhoff (PLoS Comput. Biol., 2009)

Systematic integration of experimental data and models in systems biology. - Peter Li; Joseph O. Dada; Daniel Jameson; Irena Spasic; Neil Swainston; Kathleen Carroll; Warwick B. Dunn; Farid Khan; Naglis Malys; Hanan L. Messiha; Evangelos Simeonidis; Dieter Weichart; et al. (BMC Bioinform., 2010)

The Living Cell as a Multi-agent Organisation: A Compositional Organisation Model of Intracellular Dynamics. - Catholijn M. Jonker; Jacky L. Snoep; Jan Treur; Hans V. Westerhoff; Wouter C. A. Wijngaards (Trans. Comput. Collect. Intell., 2010)

ITFoM - The IT Future of Medicine. - Hans Lehrach; Ralf Sudbrak; Peter Boyle; Markus Pasterk; Kurt Zatloukal; Heimo Müller; Tim Hubbard; Angela Brand; Mark A. Girolami; Daniel Jameson; Frank J. Bruggeman; Hans V. Westerhoff (FET, 2011)

Testing Biochemistry Revisited: How In Vivo Metabolism Can Be Understood from In Vitro Enzyme Kinetics. - Karen van Eunen; José A. L. Kiewiet; Hans V. Westerhoff; Barbara M. Bakker (PLoS Comput. Biol., 2012)

(Im)Perfect robustness and adaptation of metabolic networks subject to metabolic and gene-expression regulation: marrying control engineering with metabolic control analysis. - Fei He 002; Vincent Fromion; Hans V. Westerhoff (BMC Syst. Biol., 2013)

A reason for intermittent fasting to suppress the awakening of dormant breast tumors. - Jan Lankelma; Bob W. Kooi; Klaas Krab; Josephine C. Dorsman; Hans Joenje; Hans V. Westerhoff (Biosyst., 2015)

Multiplex Eukaryotic Transcription (In)activation: Timing, Bursting and Cycling of a Ratchet Clock Mechanism. - Katja N. Rybakova; Frank J. Bruggeman; Aleksandra Tomaszewska; Martijn J. Moné; Carsten Carlberg; Hans V. Westerhoff (PLoS Comput. Biol., 2015)

SupraBiology 2014: Promoting UK-China collaboration on Systems Biology and High Performance Computing. - Ettore Murabito; Riccardo Colombo; Chengkun Wu; Malkhey Verma; Samrina Rehman; Jacky L. Snoep; Shaoliang Peng; Naiyang Guan; Xiangke Liao; Hans V. Westerhoff (Quant. Biol., 2015)

A metabolic core model elucidates how enhanced utilization of glucose and glutamine, with enhanced glutamine-dependent lactate production, promotes cancer cell growth: The WarburQ effect. - Chiara Damiani; Riccardo Colombo; Daniela Gaglio; Fabrizia Mastroianni; Dario Pescini; Hans V. Westerhoff; Giancarlo Mauri; Marco Vanoni; Lilia Alberghina (PLoS Comput. Biol., 2017)

Integration of single-cell RNA-seq data into population models to characterize cancer metabolism. - Chiara Damiani; Davide Maspero; Marzia Di Filippo; Riccardo Colombo; Dario Pescini; Alex Graudenzi; Hans V. Westerhoff; Lilia Alberghina; Marco Vanoni; Giancarlo Mauri (PLoS Comput. Biol., 2019)

Gear Shifting in Biological Energy Transduction. - Yanfei Zhang; Hans V. Westerhoff (Entropy, 2023)

Is distance from equilibrium a good indicator for a reaction's flux control? - David D. van Niekerk; Erik Rust; Frank J. Bruggeman; Hans V. Westerhoff; Jacky L. Snoep (Biosyst., 2023)

On paradoxes between optimal growth, metabolic control analysis, and flux balance analysis. - Hans V. Westerhoff (Biosyst., 2023)

Whole-cell metabolic control analysis. - Frank J. Bruggeman; Maaike Remeijer; Maarten Droste; Luis Salinas; Meike T. Wortel; Robert Planqué; Herbert M. Sauro; Bas Teusink; Hans V. Westerhoff (Biosyst., 2023)