Schnelle Identifizierung von Peptiden durch sensitive Bestimmung ihrer Aminosäurezusammensetzung und Zugriff auf Sequenzdatenbanken. - Hans-Werner Mewes (Intemann, 1989)

The PIR-International databases. - Winona C. Barker; David G. George; Hans-Werner Mewes; Friedhelm Pfeiffer; Akira Tsugita (Nucleic Acids Res., 1993)

A new concept of sequence data distribution on wide area networks. - Klaus Heumann; David G. George; Hans-Werner Mewes (Comput. Appl. Biosci., 1994)

Genome Analysis: Pattern Search in Biological Macromolecules. - Hans-Werner Mewes; Klaus Heumann (CPM, 1995)

A Theoretical Model of Genome Redundancy. - Klaus Heumann; Hans-Werner Mewes (German Conference on Bioinformatics, 1996)

Visualization and Analysis of the Complete Yeast Genome. - Andreas Kaps; Klaus Heumann; Dmitrij Frishman; M. Bähr; Hans-Werner Mewes (German Conference on Bioinformatics - Selected Papers, 1996)

The Complete Sequence of the Yeast Genome. - Hans-Werner Mewes; A. Gleissner; M. Bähr; Klaus Heumann (German Conference on Bioinformatics, 1996)

Yeast Genome Sequence Data on Display. - Hans-Werner Mewes; A. Gleissner; M. Bähr; Klaus Heumann (German Conference on Bioinformatics, 1996)

A Top-Down Approach to Whole Genome Visualization. - Klaus Heumann; C. Harris; Hans-Werner Mewes (ISMB, 1996)

Genomanalyse und WWW: Vom Klon zum Klick. - Andreas Kaps; Klaus Heumann; Andreas Maierl; Hans-Werner Mewes (Informationstechnik Tech. Inform., 1996)

The PIR-International Protein Sequence Database. - David G. George; Winona C. Barker; Hans-Werner Mewes; Friedhelm Pfeiffer; Akira Tsugita (Nucleic Acids Res., 1996)

The MIPS Yeast Genome Database. - Kaj Albermann; M. Bähr; Dmitrij Frishman; A. Gleißner; Jean Hani; Klaus Heumann; Andreas Maierl; Alfred Zollner; Hans-Werner Mewes (German Conference on Bioinformatics, 1997)

Custom Megabase Sequencing of a Small Eucaryotic Genome in Germany. - Antje Düsterhöft; B. Obermaier; T. Pohl; R. Wambutt; T. Altmann; Helmut Blöcker; H. Hoheisel; Hans-Werner Mewes; Annemarie Poustka (German Conference on Bioinformatics, 1997)

Migrating to an Object-Oriented Protein Sequence Database. - Andreas Kaps; Hans-Werner Mewes (German Conference on Bioinformatics, 1997)

MIPS: a database for protein sequences, homology data and yeast genome information. - Hans-Werner Mewes; Kaj Albermann; Klaus Heumann; S. Lieb; Friedhelm Pfeiffer (Nucleic Acids Res., 1997)

The MIPS Yeast Genome Database. - Kaj Albermann; Jean Hani; S. Stocker; Alfred Zollner; Hans-Werner Mewes (German Conference on Bioinformatics, 1998)

Combining diverse evidence for gene recognition in completely sequenced bacterial genomes. - Dmitrij Frishman; Andrey A. Mironov; Hans-Werner Mewes; Mikhail S. Gelfand (German Conference on Bioinformatics, 1998)

Developing a groupware system for annotating Protein Sequences Using Object Oriented Technology. - Andreas Kaps; Dirk Haase; Hans-Werner Mewes (German Conference on Bioinformatics, 1998)

An Object Oriented Approach to Data Handling and Semiautomatic Processing of cDNA Clones. - Normann Strack; Hans-Werner Mewes (German Conference on Bioinformatics, 1998)

Comprehensive, comprehensible, distributed and intelligent databases: current status. - Dmitrij Frishman; Klaus Heumann; Arthur M. Lesk; Hans-Werner Mewes (Bioinform., 1998)

The PIR-International Protein Sequence Database. - Winona C. Barker; John S. Garavelli; Daniel H. Haft; Lois T. Hunt; Christopher R. Marzec; Bruce C. Orcutt; Geetha Y. Srinivasarao; Lai-Su L. Yeh; Robert S. Ledley; Hans-Werner Mewes; Friedhelm Pfeiffer; Akira Tsugita (Nucleic Acids Res., 1998)

MIPS: a database for protein sequences and complete genomes. - Hans-Werner Mewes; Jean Hani; Friedhelm Pfeiffer; Dmitrij Frishman (Nucleic Acids Res., 1998)

A generic system for the management of sequence annotations. - Ole Bents; Hans-Werner Mewes (German Conference on Bioinformatics, 1999)

Interpreting Clusters of Gene Expression Profiles in Terms of Metabolic Pathways. - Matthias Fellenberg; Hans-Werner Mewes (German Conference on Bioinformatics, 1999)

An Object-Oriented Data Model for the Dynamic Modelling of Metabolic Pathways. - Gabi Kastenmüller; Hans-Werner Mewes (German Conference on Bioinformatics, 1999)

SESAM: Seed Extraction Sequence Analysis Method. - Normann Strack; Hans-Werner Mewes (German Conference on Bioinformatics, 1999)

Homology based gene prediction in Arabidopsis thaliana. - Paolo Zaccaria; Hans-Werner Mewes (German Conference on Bioinformatics, 1999)

The PIR-International Protein Sequence Database. - Winona C. Barker; John S. Garavelli; Peter B. McGarvey; Christopher R. Marzec; Bruce C. Orcutt; Geetha Y. Srinivasarao; Lai-Su L. Yeh; Robert S. Ledley; Hans-Werner Mewes; Friedhelm Pfeiffer; Akira Tsugita; Cathy H. Wu (Nucleic Acids Res., 1999)

MIPS: a database for genomes and protein sequences. - Hans-Werner Mewes; Klaus Heumann; Andreas Kaps; Klaus F. X. Mayer; Friedhelm Pfeiffer; S. Stocker; Dmitrij Frishman (Nucleic Acids Res., 1999)

MITOP: database for mitochondria-related proteins, genes and diseases. - Curt Scharfe; Paolo Zaccaria; K. Hörtnagel; M. Jaksch; Thomas Klopstock; R. Lill; Holger Prokisch; K. D. Gerbitz; Hans-Werner Mewes; Thomas Meitinger (Nucleic Acids Res., 1999)

Integrative Analysis of Protein Interaction Data. - Matthias Fellenberg; Kaj Albermann; Alfred Zollner; Hans-Werner Mewes; Jean Hani (ISMB, 2000)

The Protein Information Resource (PIR). - Winona C. Barker; John S. Garavelli; Hongzhan Huang; Peter B. McGarvey; Bruce C. Orcutt; Geetha Y. Srinivasarao; Chunlin Xiao; Lai-Su L. Yeh; Robert S. Ledley; Joseph F. Janda; Friedhelm Pfeiffer; Hans-Werner Mewes; et al. (Nucleic Acids Res., 2000)

MIPS: a database for genomes and protein sequences. - Hans-Werner Mewes; Dmitrij Frishman; Christian Gruber; Birgitta Geier; Dirk Haase; Andreas Kaps; Kai Lemcke; Gertrud Mannhaupt; Friedhelm Pfeiffer; Christine M. Schüller; S. Stocker; B. Weil (Nucleic Acids Res., 2000)

MITOP, the mitochondrial proteome database: 2000 update. - Curt Scharfe; Paolo Zaccaria; K. Hörtnagel; M. Jaksch; Thomas Klopstock; M. Dembowski; R. Lill; Holger Prokisch; K. D. Gerbitz; W. Neupert; Hans-Werner Mewes; Thomas Meitinger (Nucleic Acids Res., 2000)

Functional and structural genomics using PEDANT. - Dmitrij Frishman; Kaj Albermann; Jean Hani; Klaus Heumann; Agnes Metanomski; Alfred Zollner; Hans-Werner Mewes (Bioinform., 2001)

The HIB database of annotated UniGene clusters. - Birgitta Geier; Gabi Kastenmüller; Matthias Fellenberg; Hans-Werner Mewes; Burkhard Morgenstern (Bioinform., 2001)

Protein Information Resource: a community resource for expert annotation of protein data. - Winona C. Barker; John S. Garavelli; Zhenglin Hou; Hongzhan Huang; Robert S. Ledley; Peter B. McGarvey; Hans-Werner Mewes; Bruce C. Orcutt; Friedhelm Pfeiffer; Akira Tsugita; Cholanayakanahalli R. Vinayaka; Chunlin Xiao; et al. (Nucleic Acids Res., 2001)

SNAPper: gene order predicts gene function. - Grigory Kolesov; Hans-Werner Mewes; Dmitrij Frishman (Bioinform., 2002)

Exon discovery by genomic sequence alignment. - Burkhard Morgenstern; Oliver Rinner; Saïd Abdeddaïm; Dirk Haase; Klaus F. X. Mayer; Andreas W. M. Dress; Hans-Werner Mewes (Bioinform., 2002)

MIPS: a database for genomes and protein sequences. - Hans-Werner Mewes; Dmitrij Frishman; Ulrich Güldener; Gertrud Mannhaupt; Klaus F. X. Mayer; Martin Mokrejs; Burkhard Morgenstern; Martin Münsterkötter; Stephen Rudd; B. Weil (Nucleic Acids Res., 2002)

MIPS Arabidopsis thaliana Database (MAtDB): an integrated biological knowledge resource based on the first complete plant genome. - Heiko Schoof; Paolo Zaccaria; Heidrun Gundlach; Kai Lemcke; Stephen Rudd; Grigory Kolesov; Roland Arnold; Hans-Werner Mewes; Klaus F. X. Mayer (Nucleic Acids Res., 2002)

The Protein Information Resource: an integrated public resource of functional annotation of proteins. - Cathy H. Wu; Hongzhan Huang; Leslie Arminski; Jorge Castro-Alvear; Yongxing Chen; Zhang-Zhi Hu; Robert S. Ledley; Kali C. Lewis; Hans-Werner Mewes; Bruce C. Orcutt; Baris E. Suzek; Akira Tsugita; et al. (Nucleic Acids Res., 2002)

Exploiting gene interaction information from microarray expression data for cancer classification. - Alexey V. Antonov; Igor V. Tetko; Michael T. Mader; Jan Budczies; Hans-Werner Mewes (German Conference on Bioinformatics, 2003)

Conservation of protein-protein interactions among Ascomycota species. - Philipp Pagel; Hans-Werner Mewes; Dmitrij Frishman (German Conference on Bioinformatics, 2003)

The PEDANT genome database. - Dmitrij Frishman; Martin Mokrejs; Denis Kosykh; Gabi Kastenmüller; Grigory Kolesov; Igor Zubrzycki; Christian Gruber; Birgitta Geier; Andreas Kaps; Kaj Albermann; Andreas Volz; Christian Wagner 008; et al. (Nucleic Acids Res., 2003)

Sputnik: a database platform for comparative plant genomics. - Stephen Rudd; Hans-Werner Mewes; Klaus F. X. Mayer (Nucleic Acids Res., 2003)

Optimization models for cancer classification: extracting gene interaction information from microarray expression data. - Alexey V. Antonov; Igor V. Tetko; Michael T. Mader; Jan Budczies; Hans-Werner Mewes (Bioinform., 2004)

A web portal for classification of expression data using maximal margin linear programming. - Alexey V. Antonov; Igor V. Tetko; Volodymyr V. Prokopenko; Denis Kosykh; Hans-Werner Mewes (Bioinform., 2004)

The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources. - Torsten Crass; Iris Antes; Rico Basekow; Peer Bork; Christian Buning; Maik Christensen; Holger Claussen 002; Christian Ebeling; Peter Ernst; Valérie Gailus-Durner; Karl-Heinz Glatting; Rolf Gohla; et al. (Bioinform., 2004)

German Conference on Bioinformatics 2003 (GCB'03). - Hans-Werner Mewes (Bioinform., 2004)

MIPS: analysis and annotation of proteins from whole genomes. - Hans-Werner Mewes; Clara Amid; Roland Arnold; Dmitrij Frishman; Ulrich Güldener; Gertrud Mannhaupt; Martin Münsterkötter; Philipp Pagel; Normann Strack; Volker Stümpflen; Jens Warfsmann; Andreas Ruepp (Nucleic Acids Res., 2004)

MIPS Arabidopsis thaliana Database (MAtDB): an integrated biological knowledge resource for plant genomics. - Heiko Schoof; Rebecca Ernst; Vladimir Nazarov; Lukas Pfeifer; Hans-Werner Mewes; Klaus F. X. Mayer (Nucleic Acids Res., 2004)

SIMAP - The similarity matrix of proteins. - Roland Arnold; Thomas Rattei; Patrick Tischler; Minh-Duc Truong; Volker Stümpflen; Hans-Werner Mewes (ECCB/JBI, 2005)

Support vector machines for separation of mixed plant?Cpathogen EST collections based on codon usage. - Caroline C. Friedel; Katharina H. V. Jahn; Selina Sommer; Stephen Rudd; Hans-Werner Mewes; Igor V. Tetko (Bioinform., 2005)

The MIPS mammalian protein?Cprotein interaction database. - Philipp Pagel; Stefan Kovac; Matthias Oesterheld; Barbara Brauner; Irmtraud Dunger-Kaltenbach; Goar Frishman; Corinna Montrone; Pekka Mark; Volker Stümpflen; Hans-Werner Mewes; Andreas Ruepp; Dmitrij Frishman (Bioinform., 2005)

MIPS bacterial genomes functional annotation benchmark dataset. - Igor V. Tetko; Barbara Brauner; Irmtraud Dunger-Kaltenbach; Goar Frishman; Corinna Montrone; Gisela Fobo; Andreas Ruepp; Alexey V. Antonov; Dimitrij Surmeli; Hans-Werner Mewes (Bioinform., 2005)

Super paramagnetic clustering of protein sequences. - Igor V. Tetko; Axel Facius; Andreas Ruepp; Hans-Werner Mewes (BMC Bioinform., 2005)

Exploiting scale-free information from expression data for cancer classification. - Alexey V. Antonov; Igor V. Tetko; Denis Kosykh; Dimitrij Surmeli; Hans-Werner Mewes (Comput. Biol. Chem., 2005)

Gene selection from microarray data for cancer classification - a machine learning approach. - Yu Wang 008; Igor V. Tetko; Mark A. Hall; Eibe Frank; Axel Facius; Klaus F. X. Mayer; Hans-Werner Mewes (Comput. Biol. Chem., 2005)

CYGD: the Comprehensive Yeast Genome Database. - Ulrich Güldener; Martin Münsterkötter; Gabi Kastenmüller; Normann Strack; Jacques van Helden; Christian Lemer; J. Richelles; Shoshana J. Wodak; J. García-Martínez; José E. Pérez-Ortín; Holger Michael; Andreas Kaps; et al. (Nucleic Acids Res., 2005)

The PEDANT genome database in 2005. - M. Louise Riley; Thorsten Schmidt; Christian Wagner 008; Hans-Werner Mewes; Dmitrij Frishman (Nucleic Acids Res., 2005)

Using Public Resource Computing and Systematic Pre-calculation for Large Scale Sequence Analysis. - Thomas Rattei; Mathias C. Walter; Roland Arnold; David P. Anderson; Hans-Werner Mewes (GCCB, 2006)

FGDB: a comprehensive fungal genome resource on the plant pathogen Fusarium graminearum. - Ulrich Güldener; Gertrud Mannhaupt; Martin Münsterkötter; Dirk Haase; Matthias Oesterheld; Volker Stümpflen; Hans-Werner Mewes; Gerhard Adam (Nucleic Acids Res., 2006)

MPact: the MIPS protein interaction resource on yeast. - Ulrich Güldener; Martin Münsterkötter; Matthias Oesterheld; Philipp Pagel; Andreas Ruepp; Hans-Werner Mewes; Volker Stümpflen (Nucleic Acids Res., 2006)

MIPS: analysis and annotation of proteins from whole genomes in 2005. - Hans-Werner Mewes; Dmitrij Frishman; Klaus F. X. Mayer; Martin Münsterkötter; Octave Noubibou; Philipp Pagel; Thomas Rattei; Matthias Oesterheld; Andreas Ruepp; Volker Stümpflen (Nucleic Acids Res., 2006)

SIMAP: the similarity matrix of proteins. - Thomas Rattei; Roland Arnold; Patrick Tischler; Dominik Lindner; Volker Stümpflen; Hans-Werner Mewes (Nucleic Acids Res., 2006)

The Mouse Functional Genome Database (MfunGD): functional annotation of proteins in the light of their cellular context. - Andreas Ruepp; Octave Noubibou Doudieu; Jos van den Oever; Barbara Brauner; Irmtraud Dunger-Kaltenbach; Gisela Fobo; Goar Frishman; Corinna Montrone; Christine Skornia; Steffi Wanka; Thomas Rattei; Philipp Pagel; et al. (Nucleic Acids Res., 2006)

Spatiotemporal Expression Control Correlates with Intragenic Scaffold Matrix Attachment Regions (S/MARs) in Arabidopsis thaliana. - Igor V. Tetko; Georg Haberer; Stephen Rudd; Blake C. Meyers; Hans-Werner Mewes; Klaus F. X. Mayer (PLoS Comput. Biol., 2006)

Correction: Spatiotemporal Expression Control Correlates with Intragenic Scaffold Matrix Attachment Regions (S/MARs) in Arabidopsis thaliana. - Igor V. Tetko; Georg Haberer; Stephen Rudd; Blake C. Meyers; Hans-Werner Mewes; Klaus F. X. Mayer (PLoS Comput. Biol., 2006)

Revealing Comprehensive Genotype-Phenotype Associations through Logic Relationships. - Alexey V. Antonov; Hans-Werner Mewes (German Conference on Bioinformatics, 2007)

Analysis of integrated biomolecular networks using a generic network analysis suite. - Matthias Oesterheld; Hans-Werner Mewes; Volker Stümpflen (J. Integr. Bioinform., 2007)

PEDANT genome database: 10 years online. - M. Louise Riley; Thorsten Schmidt; Irena I. Artamonova; Christian Wagner 008; Andreas Volz; Klaus Heumann; Hans-Werner Mewes; Dmitrij Frishman (Nucleic Acids Res., 2007)

An environmental perspective on large-scale genome clustering based on metabolic capabilities. - Gabi Kastenmüller; Johann Gasteiger; Hans-Werner Mewes (ECCB, 2008)

Consecutive KEGG Pathway Models for the Interpretation of High-throughput Genomics Data. - Alexey V. Antonov; Sabine Dietmann; Hans-Werner Mewes (German Conference on Bioinformatics, 2008)

Beyond the "best" match: machine learning annotation of protein sequences by integration of different sources of information. - Igor V. Tetko; Igor V. Rodchenkov; Mathias C. Walter; Thomas Rattei; Hans-Werner Mewes (Bioinform., 2008)

Complex phylogenetic profiling reveals fundamental genotype-phenotype associations. - Alexey V. Antonov; Hans-Werner Mewes (Comput. Biol. Chem., 2008)

FunCat functional inference with belief propagation and feature integration. - Dimitrij Surmeli; Oliver Ratmann; Hans-Werner Mewes; Igor V. Tetko (Comput. Biol. Chem., 2008)

ProfCom: a web tool for profiling the complex functionality of gene groups identified from high-throughput data. - Alexey V. Antonov; Thorsten Schmidt; Yu Wang 008; Hans-Werner Mewes (Nucleic Acids Res., 2008)

MIPS: analysis and annotation of genome information in 2007. - Hans-Werner Mewes; Sabine Dietmann; Dmitrij Frishman; Richard Gregory 003; Gertrud Mannhaupt; Klaus F. X. Mayer; Martin Münsterkötter; Andreas Ruepp; Manuel Spannagl; Volker Stümpflen; Thomas Rattei (Nucleic Acids Res., 2008)

SIMAP - structuring the network of protein similarities. - Thomas Rattei; Patrick Tischler; Roland Arnold; Franz Hamberger; Jörg Krebs; Jan Krumsiek; Benedikt Wachinger; Volker Stümpflen; Hans-Werner Mewes (Nucleic Acids Res., 2008)

CORUM: the comprehensive resource of mammalian protein complexes. - Andreas Ruepp; Barbara Brauner; Irmtraud Dunger-Kaltenbach; Goar Frishman; Corinna Montrone; Michael Stransky; Brigitte Waegele; Thorsten Schmidt; Octave Noubibou Doudieu; Volker Stümpflen; Hans-Werner Mewes (Nucleic Acids Res., 2008)

OREST: the online resource for EST analysis. - Brigitte Waegele; Thorsten Schmidt; Hans-Werner Mewes; Andreas Ruepp (Nucleic Acids Res., 2008)

The DICS repository: module-assisted analysis of disease-related gene lists. - Sabine Dietmann; Elisabeth Georgii; Alexey V. Antonov; Koji Tsuda; Hans-Werner Mewes (Bioinform., 2009)

CRONOS: the cross-reference navigation server. - Brigitte Waegele; Irmtraud Dunger-Kaltenbach; Gisela Fobo; Corinna Montrone; Hans-Werner Mewes; Andreas Ruepp (Bioinform., 2009)

GeneSet2miRNA: finding the signature of cooperative miRNA activities in the gene lists. - Alexey V. Antonov; Sabine Dietmann; Philip Wong; Dominik Lutter; Hans-Werner Mewes (Nucleic Acids Res., 2009)

PEDANT covers all complete RefSeq genomes. - Mathias C. Walter; Thomas Rattei; Roland Arnold; Ulrich Güldener; Martin Münsterkötter; Karamfilka Nenova; Gabi Kastenmüller; Patrick Tischler; Andreas Wölling; Andreas Volz; Norbert Pongratz; Ralf Jost; et al. (Nucleic Acids Res., 2009)

SIMAP - a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters. - Thomas Rattei; Patrick Tischler; Stefan Götz 003; Marc-André Jehl; Jonathan Hoser; Roland Arnold; Ana Conesa; Hans-Werner Mewes (Nucleic Acids Res., 2010)

CORUM: the comprehensive resource of mammalian protein complexes - 2009. - Andreas Ruepp; Brigitte Waegele; Martin Lechner; Barbara Brauner; Irmtraud Dunger-Kaltenbach; Gisela Fobo; Goar Frishman; Corinna Montrone; Hans-Werner Mewes (Nucleic Acids Res., 2010)

The sufficient minimal set of miRNA seed types. - Daniel C. Ellwanger; Florian A. Büttner; Hans-Werner Mewes; Volker Stümpflen (Bioinform., 2011)

MIPS: curated databases and comprehensive secondary data resources in 2010. - Hans-Werner Mewes; Andreas Ruepp; Fabian J. Theis; Thomas Rattei; Mathias C. Walter; Dmitrij Frishman; Karsten Suhre; Manuel Spannagl; Klaus F. X. Mayer; Volker Stümpflen; Alexey V. Antonov (Nucleic Acids Res., 2011)

FGDB: revisiting the genome annotation of the plant pathogen Fusarium graminearum. - Philip Wong; Mathias C. Walter; Wanseon Lee; Gertrud Mannhaupt; Martin Münsterkötter; Hans-Werner Mewes; Gerhard Adam; Ulrich Güldener (Nucleic Acids Res., 2011)

EXPANDS: expanding ploidy and allele frequency on nested subpopulations. - Noemi Andor; Julie V. Harness; Sabine Müller 002; Hans-Werner Mewes; Claudia Petritsch (Bioinform., 2014)

SIMAP - the database of all-against-all protein sequence similarities and annotations with new interfaces and increased coverage. - Roland Arnold; Florian Goldenberg; Hans-Werner Mewes; Thomas Rattei (Nucleic Acids Res., 2014)

KNIME4NGS: a comprehensive toolbox for next generation sequencing analysis. - Maximilian Hastreiter; Tim Jeske; Jonathan Hoser; Michael Kluge; Kaarin Ahomaa; Marie-Sophie Friedl; Sebastian J. Kopetzky; Jan-Dominik Quell; Hans-Werner Mewes; Robert Küffner (Bioinform., 2017)

SmartPhase: Accurate and fast phasing of heterozygous variant pairs for genetic diagnosis of rare diseases. - Paul Hager; Hans-Werner Mewes; Meino Rohlfs; Christoph Klein 001; Tim Jeske (PLoS Comput. Biol., 2020)