Evidence of chaos in phonatory samples. - Hanspeter Herzel; J. Wendler (EUROSPEECH, 1991)

Modelling biphonation - The role of the vocal tract. - Patrick Mergell; Hanspeter Herzel (Speech Commun., 1997)

Sequence Periodicities in Complete Genomes Reflect Supercoiling. - Hanspeter Herzel; Olaf Weiss; Edward N. Trifonov (German Conference on Bioinformatics, 1998)

Property Codes in Sets of Protein Sequences. - Olaf Weiss; Hanspeter Herzel (German Conference on Bioinformatics, 1998)

Mutual Information Analysis of Surrogate Gene Expression Data. - Dirk Holste; Dieter Beule; Wolfram Liebermeister; Johannes Schuchhardt; Hanspeter Herzel (German Conference on Bioinformatics, 1999)

10-11 bp periodicities in complete genomes reflect protein structure and DNA folding. - Hanspeter Herzel; Olaf Weiss; Edward N. Trifonov (Bioinform., 1999)

Reliability of Microarray Data and Clustering. - Dieter Beule; Johannes Schuchhardt; Arif Malik; Holger Eickhoff; Hans Lehrach; Hanspeter Herzel (German Conference on Bioinformatics, 2000)

Finding Transcription Factor Binding Sites in Coregulated Genes by Exhaustive Sequence Search. - Szymon M. Kielbasa; Jan O. Korbel; Dieter Beule; Johannes Schuchhardt; Hanspeter Herzel (German Conference on Bioinformatics, 2000)

Peptide Binding Landscapes. - Johannes Schuchhardt; Liying Dong; Ulrich Hoffmüller; Achim Kramer; Jens Schneider-Mergener; Hanspeter Herzel (German Conference on Bioinformatics, 2000)

Combining frequency and positional information to predict transcription factor binding sites. - Szymon M. Kielbasa; Jan O. Korbel; Dieter Beule; Johannes Schuchhardt; Hanspeter Herzel (Bioinform., 2001)

Modeling the G1/S transition in mammals -Bifurcation an alysis of elementary modules. - Maciej Swat; Alexander E. Kel; Szymon M. Kielbasa; Hanspeter Herzel (German Conference on Bioinformatics, 2003)

Optimizing Property Codes in Protein Data Reveals Structural Characteristics. - Olaf Weiss; Andreas Ziehe; Hanspeter Herzel (ICANN, 2003)

Genome-wide Analysis of Functions Regulated by Sets of Transcription Factors. - Szymon M. Kielbasa; Nils Blüthgen; Hanspeter Herzel (German Conference on Bioinformatics, 2004)

HOMGL - comparing genelists across species and with different accession numbers. - Nils Blüthgen; Szymon M. Kielbasa; Branka Cajavec; Hanspeter Herzel (Bioinform., 2004)

Bifurcation analysis of the regulatory modules of the mammalian G1/S transition. - Maciej Swat; Alexander E. Kel; Hanspeter Herzel (Bioinform., 2004)

Two-mass models of the bird syrinx. - Riccardo Zaccarelli; Coen Elemans; W. Tecumseh Fitch; Hanspeter Herzel (MAVEBA, 2005)

Measuring similarities between transcription factor binding sites. - Szymon M. Kielbasa; Didier Gonze; Hanspeter Herzel (BMC Bioinform., 2005)

HuSiDa - the human siRNA database: an open-access database for published functional siRNA sequences and technical details of efficient transfer into recipient cells. - Matthias Truss; Maciej Swat; Szymon M. Kielbasa; Reinhold Schäfer; Hanspeter Herzel; Christian Hagemeier (Nucleic Acids Res., 2005)

Ultrasensitization: Switch-Like Regulation of Cellular Signaling by Transcriptional Induction. - Stefan Legewie; Nils Blüthgen; Reinhold Schäfer; Hanspeter Herzel (PLoS Comput. Biol., 2005)

Comparison of Human Protein-Protein Interaction Maps. - Matthias E. Futschik; Gautam Chaurasia; Erich E. Wanker; Hanspeter Herzel (German Conference on Bioinformatics, 2006)

DNA Motifs and Sequence Periodicities. - Lokesh Kumar; Matthias E. Futschik; Hanspeter Herzel (Silico Biol., 2006)

Mathematical Modeling Identifies Inhibitors of Apoptosis as Mediators of Positive Feedback and Bistability. - Stefan Legewie; Nils Blüthgen; Hanspeter Herzel (PLoS Comput. Biol., 2006)

Are we Overestimating the Number of Cell-Cycling Genes? The Impact of Background Models. - Matthias E. Futschik; Hanspeter Herzel (German Conference on Bioinformatics, 2007)

Comparison of human protein-protein interaction maps. - Matthias E. Futschik; Gautam Chaurasia; Hanspeter Herzel (Bioinform., 2007)

Flexible web-based integration of distributed large-scale human protein interaction maps. - Gautam Chaurasia; Yasir Iqbal; Christian Hänig; Hanspeter Herzel; Erich E. Wanker; Matthias E. Futschik (J. Integr. Bioinform., 2007)

Functional and Transcriptional Coherency of Modules in the Human Protein Interaction Network . - Matthias E. Futschik; Gautam Chaurasia; Anna Tschaut; Jenny Russ; M. Madan Babu; Hanspeter Herzel (J. Integr. Bioinform., 2007)

UniHI: an entry gate to the human protein interactome. - Gautam Chaurasia; Yasir Iqbal; Christian Hänig; Hanspeter Herzel; Erich E. Wanker; Matthias E. Futschik (Nucleic Acids Res., 2007)

Synchronization-Induced Rhythmicity of Circadian Oscillators in the Suprachiasmatic Nucleus. - Samuel Bernard; Didier Gonze; Branka Cajavec; Hanspeter Herzel; Achim Kramer (PLoS Comput. Biol., 2007)

Are we overestimating the number of cell-cycling genes? The impact of background models on time-series analysis. - Matthias E. Futschik; Hanspeter Herzel (Bioinform., 2008)

Global parameter search reveals design principles of the mammalian circadian clock. - James C. W. Locke; Pål O. Westermark; Achim Kramer; Hanspeter Herzel (BMC Syst. Biol., 2008)

Quantification of Circadian Rhythms in Single Cells. - Pål O. Westermark; David K. Welsh; Hitoshi Okamura; Hanspeter Herzel (PLoS Comput. Biol., 2009)

Tumor Growth Rate Determines the Timing of Optimal Chronomodulated Treatment Schedules. - Samuel Bernard; Branka Cajavec Bernard; Francis Lévi; Hanspeter Herzel (PLoS Comput. Biol., 2010)

Tuning the Mammalian Circadian Clock: Robust Synergy of Two Loops. - Angela Relógio; Pål O. Westermark; Thomas Wallach; Katja Schellenberg; Achim Kramer; Hanspeter Herzel (PLoS Comput. Biol., 2011)

Elucidating the adaptation and temporal coordination of metabolic pathways using in-silico evolution. - Willi Gottstein; Stefan Müller 009; Hanspeter Herzel; Ralf Steuer (Biosyst., 2014)

Timing of Neuropeptide Coupling Determines Synchrony and Entrainment in the Mammalian Circadian Clock. - Bharath Ananthasubramaniam; Erik D. Herzog; Hanspeter Herzel (PLoS Comput. Biol., 2014)

Mining for novel candidate clock genes in the circadian regulatory network. - Anuprabha Bhargava; Hanspeter Herzel; Bharath Ananthasubramaniam (BMC Syst. Biol., 2015)

Feedback Loops of the Mammalian Circadian Clock Constitute Repressilator. - J. Patrick Pett; Anja Korencic; Felix Wesener; Achim Kramer; Hanspeter Herzel (PLoS Comput. Biol., 2016)

Moran's I quantifies spatio-temporal pattern formation in neural imaging data. - Christoph Schmal; Jihwan Myung; Hanspeter Herzel; Grigory V. Bordyugov (Bioinform., 2017)

Coherency of circadian rhythms in the SCN is governed by the interplay of two coupling factors. - Isao T. Tokuda; Daisuke Ono; Sato Honma; Ken-ichi Honma; Hanspeter Herzel (PLoS Comput. Biol., 2018)

Weak coupling between intracellular feedback loops explains dissociation of clock gene dynamics. - Christoph Schmal; Daisuke Ono; Jihwan Myung; J. Patrick Pett; Sato Honma; Ken-ichi Honma; Hanspeter Herzel; Isao T. Tokuda (PLoS Comput. Biol., 2019)