MONN: A Multi-objective Neural Network for Predicting Pairwise Non-covalent Interactions and Binding Affinities Between Compounds and Proteins. - Shuya Li; Fangping Wan; Hantao Shu; Tao Jiang 001; Dan Zhao 004; Jianyang Zeng 001 (RECOMB, 2020)

Modeling gene regulatory networks using neural network architectures. - Hantao Shu; Jingtian Zhou; Qiuyu Lian; Han Li 018; Dan Zhao 004; Jianyang Zeng 001; Jianzhu Ma (Nat. Comput. Sci., 2021)

Boosting single-cell gene regulatory network reconstruction via bulk-cell transcriptomic data. - Hantao Shu; Fan Ding; Jingtian Zhou; Yexiang Xue; Dan Zhao 004; Jianyang Zeng 001; Jianzhu Ma (Briefings Bioinform., 2022)

Discrete Conditional Diffusion for Reranking in Recommendation. - Xiao Lin 002; Xiaokai Chen; Chenyang Wang 003; Hantao Shu; Linfeng Song; Biao Li; Peng Jiang 002 (WWW (Companion Volume), 2024)