Accounting for tumor purity improves cancer subtype classification from DNA methylation data. - Weiwei Zhang; Hao Feng 005; Hao Wu 003; Xiaoqi Zheng (Bioinform., 2017)

Disease prediction by cell-free DNA methylation. - Hao Feng 005; Peng Jin; Hao Wu 003 (Briefings Bioinform., 2019)

Differential methylation analysis for bisulfite sequencing using DSS. - Hao Feng 005; Hao Wu 003 (Quant. Biol., 2019)

NeuCA web server: a neural network-based cell annotation tool with web-app and GUI. - Daoyu Duan; Sijia He; Emina Huang; Ziyi Li 001; Hao Feng 005 (Bioinform., 2022)

A comprehensive assessment of cell type-specific differential expression methods in bulk data. - Guanqun Meng; Wen Tang 003; Emina Huang; Ziyi Li 001; Hao Feng 005 (Briefings Bioinform., 2023)

Evaluation of epitranscriptome-wide N6-methyladenosine differential analysis methods. - Daoyu Duan; Wen Tang 003; Runshu Wang; Zhenxing Guo; Hao Feng 005 (Briefings Bioinform., 2023)

magpie: A power evaluation method for differential RNA methylation analysis in N6-methyladenosine sequencing. - Zhenxing Guo; Daoyu Duan; Wen Tang 003; Julia Zhu; William S. Bush; Liangliang Zhang; Xiaofeng Zhu; Fulai Jin; Hao Feng 005 (PLoS Comput. Biol., 2024)