Constrained Multiple Sequence Alignment Tool Development and Its Application to RNase Family Alignment. - Chuan Yi Tang; Chin Lung Lu; Margaret Dah-Tsyr Chang; Yin-Te Tsai; Yuh-Ju Sun; Kun-Mao Chao; Jia-Ming Chang; Yu-Han Chiou; Chia-Mao Wu; Hao-Teng Chang; Wei-I Chou (CSB, 2002)

Constrained Multiple Sequence Alignment Tool Development Andits Application to Rnase Family Alignment. - Chuan Yi Tang; Chin Lung Lu; Margaret Dah-Tsyr Chang; Yin-Te Tsai; Yuh-Ju Sun; Kun-Mao Chao; Jia-Ming Chang; Yu-Han Chiou; Chia-Mao Wu; Hao-Teng Chang; Wei-I Chou (J. Bioinform. Comput. Biol., 2003)

Unique peptide prediction of RNase family sequences based on reinforced merging algorithms. - Hao-Teng Chang; Tan-Chi Fan; Margaret Dah-Tsyr Chang; Tun-Wen Pai; Bo-Han Su; Pei-Chih Wu (APBC, 2005)

A reinforced merging methodology for mapping unique peptide motifs in members of protein families. - Hao-Teng Chang; Tun-Wen Pai; Tan-Chi Fan; Bo-Han Su; Pei-Chih Wu; Chuan Yi Tang; Chun-Tien Chang; Shi-Hwei Liu; Margaret Dah-Tsyr Chang (BMC Bioinform., 2006)

Unique Peptide Identification of Rnasea Superfamily Sequences Based on Reinforced Merging Algorithms. - Tun-Wen Pai; Bo-Han Su; Pei-Chih Wu; Margaret Dah-Tsyr Chang; Hao-Teng Chang; Tan-Chi Fan; Shi-Hwei Liu (J. Bioinform. Comput. Biol., 2006)

REMUS: a tool for identification of unique peptide segments as epitopes. - Tun-Wen Pai; Margaret Dah-Tsyr Chang; Wen-Shyong Tzou; Bo-Han Su; Pei-Chih Wu; Hao-Teng Chang; Wei-I Chou (Nucleic Acids Res., 2006)

A Database for Prediction of Unique Peptide Motifs as Linear Epitopes. - Margaret Dah-Tsyr Chang; Hao-Teng Chang; Rong-Yuan Huang; Wen-Shyong Tzou; Chih-Hong Liu; Wei-Jun Zhung; Hsien-Wei Wang; Chun-Tien Chang; Tun-Wen Pai (ISBRA, 2007)

Biological Feature Incorporated Alignment for Cross Species Analysis on Carbohydrate Binding Modules. - Wei-Yao Chou; Shu-Chuan Lin; Rong-Yuan Huang; Ting-Ying Jiang; Chien-Jung Chen; Chia-Mao Wu; Chuan Yi Tang; Margaret Dah-Tsyr Chang; Wei-I Chou; Hao-Teng Chang (BIBM, 2009)

B-Cell Conformational Epitope Prediction based on Structural Relationship and Antigenic Characteristics. - Wei-Kuo Wu; Wei-Chun Chung; Hao-Teng Chang; Ron-Shan Cheng; Tun-Wen Pai (CISIS, 2009)

Prediction of Regulatory Molecules for Enhancement of EGFR Overexpression Triggered by Signal Peptide of Ribonuclease 3. - Hao-Teng Chang; Chung-Hsiao Chao; Yu-Fong Lin; Louis J. Tseng; Tun-Wen Pai; Tsan-Huang Shih; Margaret Dah-Tsyr Chang; Pei-Wen Tsai (CISIS, 2010)

Inhibition of the interactions between eosinophil cationic protein and airway epithelial cells by traditional Chinese herbs. - Hao-Teng Chang; Louis J. Tseng; Ta-Jen Hung; Blacky T. Kao; Wei-Yong Lin; Tan-Chi Fan; Margaret Dah-Tsyr Chang; Tun-Wen Pai (BMC Syst. Biol., 2010)

An Atomatic Fundus Image Analysis System for Clinical Diagnosis of Glaucoma. - Chih-Yin Ho; Tun-Wen Pai; Hao-Teng Chang; Hsin-Yi Chen (CISIS, 2011)

A Hybrid Method of Propensity Scales and Support Vector Machine in a Linear Epitope Prediction. - Hsin-Wei Wang; Ya-Chi Lin; Tun-Wen Pai; Pei-Wen Tsai; Hao-Teng Chang (CISIS, 2011)

Poster: Linear B-cell epitope prediction based on Support Vector Machine and propensity scales. - Hsien-Wei Wang; Ya-Chi Lin; Tun-Wen Pai; Hao-Teng Chang (ICCABS, 2011)

Functional pathway mapping analysis for hypoxia-inducible factors. - Chia-Sheng Chuang; Tun-Wen Pai; Chin-Hua Hu; Wen-Shyong Tzou; Margaret Dah-Tsyr Chang; Hao-Teng Chang; Chih-Chia Chen (BMC Syst. Biol., 2011)

Chemoattraction of macrophages by secretory molecules derived from cells expressing the signal peptide of eosinophil cationic protein. - Yushu Liu; Pei-Wen Tsai; Yong Wang; Tan-Chi Fan; Chia-Hung Hsieh; Margaret Dah-Tsyr Chang; Tun-Wen Pai; Chien-Fu Huang; Chung-Yu Lan; Hao-Teng Chang (BMC Syst. Biol., 2012)

Mining Polymorphic SSRs from Individual Genome Sequences. - Yu-Lun Lu; Chien-Ming Chen; Tun-Wen Pai; Hao-Teng Chang (CISIS, 2013)

3D reconstruction of intricate objects using planar cast shadows. - Tzung-Han Lin; Hao-Teng Chang; Shang-Jen Hu (SIGGRAPH Posters, 2013)

Prediction of conformational epitopes with the use of a knowledge-based energy function and geometrically related neighboring residue characteristics. - Ying-Tsang Lo; Tun-Wen Pai; Wei-Kuo Wu; Hao-Teng Chang (BMC Bioinform., 2013)

Protein-ligand binding region prediction (PLB-SAVE) based on geometric features and CUDA acceleration. - Ying-Tsang Lo; Hsin-Wei Wang; Tun-Wen Pai; Wen-Shyong Tzou; Hui-Huang Hsu; Hao-Teng Chang (BMC Bioinform., 2013)

Transcriptome Data Visualization in Pathways with Application to Zebrafish Embryo Datasets. - Chien-Ming Chen; Kuan Jung Lai; Tun-Wen Pai; Hao-Teng Chang (CISIS, 2014)