npInv: accurate detection and genotyping of inversions using long read sub-alignment. - Haojing Shao; Devika Ganesamoorthy; Tania P. S. Duarte; Minh Duc Cao; Clive J. Hoggart; Lachlan J. M. Coin (BMC Bioinform., 2018)

BSAlign: A Library for Nucleotide Sequence Alignment. - Haojing Shao; Jue Ruan (Genom. Proteom. Bioinform., 2024)