RSVdb: a comprehensive database of transcriptome RNA structure. - Haopeng Yu; Yi Zhang; Qing Sun; Huijie Gao; Shiheng Tao (Briefings Bioinform., 2021)

piRBase: integrating piRNA annotation in all aspects. - Jiajia Wang; Yirong Shi; Honghong Zhou; Peng Zhang 047; Tingrui Song; Zhiye Ying; Haopeng Yu; Yanyan Li; Yi Zhao 013; Xiaoxi Zeng; Shunmin He; Runsheng Chen (Nucleic Acids Res., 2022)

G4Atlas: a comprehensive transcriptome-wide G-quadruplex database. - Haopeng Yu; Yiman Qi; Bibo Yang; Xiaofei Yang 009; Yiliang Ding (Nucleic Acids Res., 2023)

An interpretable RNA foundation model for exploring functional RNA motifs in plants. - Haopeng Yu; Heng Yang 008; Wenqing Sun; Zongyun Yan; Xiaofei Yang 009; Huakun Zhang; Yiliang Ding; Ke Li 001 (Nat. Mac. Intell., 2024)