Convolutional neural network architectures for predicting DNA-protein binding. - Haoyang Zeng; Matthew D. Edwards; Ge Liu; David K. Gifford (Bioinform., 2016)

GERV: a statistical method for generative evaluation of regulatory variants for transcription factor binding. - Haoyang Zeng; Tatsunori B. Hashimoto; Daniel D. Kang; David K. Gifford (Bioinform., 2016)

K-mer Set Memory (KSM) Motif Representation Enables Accurate Prediction of the Impact of Regulatory Variants. - Yuchun Guo; Kevin Tian; Haoyang Zeng; David K. Gifford (RECOMB, 2017)

Training GANs with Optimism. - Constantinos Daskalakis; Andrew Ilyas; Vasilis Syrgkanis; Haoyang Zeng (ICLR (Poster), 2018)

DeepLigand: accurate prediction of MHC class I ligands using peptide embedding. - Haoyang Zeng; David K. Gifford (Bioinform., 2019)

Visualizing complex feature interactions and feature sharing in genomic deep neural networks. - Ge Liu; Haoyang Zeng; David K. Gifford (BMC Bioinform., 2019)

Machine learning models for functional genomics and therapeutic design. - Haoyang Zeng (2019)

Antibody complementarity determining region design using high-capacity machine learning. - Ge Liu; Haoyang Zeng; Jonas Mueller 001; Brandon Carter 001; Ziheng Wang; Jonas Schilz; Geraldine Horny; Michael E. Birnbaum; Stefan Ewert; David K. Gifford (Bioinform., 2020)

Machine learning optimization of peptides for presentation by class II MHCs. - Zheng Dai; Brooke D. Huisman; Haoyang Zeng; Brandon Carter 001; Siddhartha Jain 001; Michael E. Birnbaum; David K. Gifford (Bioinform., 2021)

Cloud-Edge Collaborative Task Scheduling Mechanism Based on Improved Parameter Adaptation Particle Swarm Optimization Algorithm. - Haoyang Zeng; Ningjiang Chen; Wanting Li; Siyu Yu (ChineseCSCW (1), 2022)

LSTD-MTS: Anomaly Detection with Capturing Long-Term Spatio-Temporal Dependence for Multi-dimensional Time Series. - Haoyang Zeng; Ningjiang Chen; Tao Deng (Internetware, 2024)

Named Entity Recognition Model Based on the Fusion of Word Vectors and Category Vectors. - Yang Zhou 002; Haoyang Zeng; Wei Zhang 141; Yuguang Zhang (IEEE Access, 2024)

Anomaly detection for key performance indicators by fusing self-supervised spatio-temporal graph attention networks. - Ningjiang Chen; Huan Tu; Haoyang Zeng; Yangjie Ou (Knowl. Based Syst., 2024)

6G FR3 Band-limited Based DPD using Low-Resolution Σ∆ Feedback Receiver. - Haoyang Zeng; Ahmed A. Ghoniem; Dang-Kièn Germain Pham; Michel Vasilevski; Reda Mohellebi; Hassan Aboushady; Chadi Jabbour (ISCAS, 2025)