BitMapper: an efficient all-mapper based on bit-vector computing. - Haoyu Cheng; Huaipan Jiang; Jiaoyun Yang; Yun Xu; Yi Shang (BMC Bioinform., 2015)

An Efficient Filtration Method Based on Variable-Length Seeds for Sequence Alignment. - Ruidong Guo; Haoyu Cheng; Yun Xu (PAAP, 2017)

FMtree: a fast locating algorithm of FM-indexes for genomic data. - Haoyu Cheng; Ming Wu 003; Yun Xu (Bioinform., 2018)

Smooth switching linear parameter-varying fault detection filter design for morphing aircraft with asynchronous switching. - Haoyu Cheng; Chaoyang Dong; Qing Wang 019; Weilai Jiang (Trans. Inst. Meas. Control, 2018)

Asynchronously finite-time H∞ control for morphing aircraft. - Haoyu Cheng; Wenxing Fu; Chaoyang Dong; Qing Wang 019; Yanze Hou (Trans. Inst. Meas. Control, 2018)

BitMapper2: A GPU-Accelerated All-Mapper Based on the Sparse q-Gram Index. - Haoyu Cheng; Yong Zhang; Yun Xu (IEEE ACM Trans. Comput. Biol. Bioinform., 2019)

Fault Detection and Optimization for Flight Vehicles via Deep Reinforcement Learning. - Haoyu Cheng; Ping Chen; Linan Shi; Yanfeng He; Renyi Hu; Jie Zhang (ICCA, 2020)

LVMapper: A Large-Variance Clone Detector Using Sequencing Alignment Approach. - Ming Wu 003; Pengcheng Wang; Kangqi Yin; Haoyu Cheng; Yun Xu; Chanchal K. Roy (IEEE Access, 2020)

Real-time mapping of nanopore raw signals. - Haowen Zhang; Haoran Li; Chirag Jain; Haoyu Cheng; Kin Fai Au; Heng Li 002; Srinivas Aluru (Bioinform., 2021)

Unmanned aerial vehicle formation obstacle avoidance control based on light transmission model and improved artificial potential field. - Jiacheng Li; Yangwang Fang; Haoyu Cheng; Zhikai Wang; Shuaiqi Huangfu (Trans. Inst. Meas. Control, 2022)

DPBC-VCP: A Network-On-Chip Prioritization Mechanism Combined with VCP for CPU-GPU Heterogeneous Systems. - Juan Fang; Haoyu Cheng; Zhichao Wei; Huijing Yang (ICPADS, 2023)

Locate N' Rotate: Two-Stage Openable Part Detection with Foundation Model Priors. - Siqi Li; Xiaoxue Chen; Haoyu Cheng; Guyue Zhou; Hao Zhao 002; Guanzhong Tian (ACCV (7), 2024)

DRCD: a regional-contention-driven arbitration policy for CPU-GPU heterogeneous systems. - Juan Fang; Haoyu Cheng; Yuening Wang; Ran Zhai (J. Supercomput., 2025)