BEDAM binding free energy predictions for the SAMPL4 octa-acid host challenge. - Emilio Gallicchio; Haoyuan Chen; He Chen; Michael Fitzgerald; Yang Gao 019; Peng He; Malathi Kalyanikar; Chuan Kao; Beidi Lu; Yijie Niu; Manasi A. Pethe; Jie Zhu; et al. (J. Comput. Aided Mol. Des., 2015)

RepEx: A Flexible Framework for Scalable Replica Exchange Molecular Dynamics Simulations. - Antons Treikalis; André Merzky; Haoyuan Chen; Tai-Sung Lee; Darrin M. York; Shantenu Jha (ICPP, 2016)

Tripartite Effects: Exploring Users' Mental Model of Mobile Gestures under the Influence of Operation, Handheld Posture, and Interaction Space. - Kening Zhu; Xiaojuan Ma; Haoyuan Chen; Miaoyin Liang (Int. J. Hum. Comput. Interact., 2017)

Mobility Prediction Based on POI-Clustered Data. - Haoyuan Chen; Yali Fan; Jing Jiang; Xiang Chen 007 (MLICOM, 2018)

A Joint Learning Framework With BERT for Spoken Language Understanding. - Zhichang Zhang; Zhenwen Zhang; Haoyuan Chen; Zhiman Zhang (IEEE Access, 2019)

GasHis-Transformer: A Multi-scale Visual Transformer Approach for Gastric Histopathology Image Classification. - Haoyuan Chen; Chen Li 022; Xiaoyan Li; Weiming Hu; Yixin Li; Wanli Liu; Changhao Sun; Yudong Yao; Marcin Grzegorzek (CoRR, 2021)

Is Image Size Important? A Robustness Comparison of Deep Learning Methods for Multi-scale Cell Image Classification Tasks: from Convolutional Neural Networks to Visual Transformers. - Wanli Liu; Chen Li 022; Hongzan Sun; Weiming Hu; Haoyuan Chen; Changhao Sun; Marcin Grzegorzek (CoRR, 2021)

A Comparison for Anti-noise Robustness of Deep Learning Classification Methods on a Tiny Object Image Dataset: from Convolutional Neural Network to Visual Transformer and Performer. - Ao Chen 001; Chen Li 022; Haoyuan Chen; Hechen Yang; Peng Zhao; Weiming Hu; Wanli Liu; Shuojia Zou; Marcin Grzegorzek (CoRR, 2021)

A New Gastric Histopathology Subsize Image Database (GasHisSDB) for Classification Algorithm Test: from Linear Regression to Visual Transformer. - Weiming Hu; Chen Li 022; Xiaoyan Li; Md Mamunur Rahaman; Jiquan Ma; Haoyuan Chen; Wanli Liu; Changhao Sun; Marcin Grzegorzek (CoRR, 2021)

DVT: Application of Deep Visual Transformer in Cervical Cell Image Classification. - Wanli Liu; Chen Li 022; Hongzan Sun; Weiming Hu; Haoyuan Chen; Marcin Grzegorzek (ITIB, 2022)

Image Classification in Breast Histopathology Using Transfer and Ensemble Learning. - Yuchao Zheng; Chen Li 022; Xiaomin Zhou; Haoyuan Chen; Haiqing Zhang; Yixin Li; Hongzan Sun; Marcin Grzegorzek (ITIB, 2022)

Financial fraud identification considering investor heterogeneous beliefs: Evidence from Chinese listed companies. - Zihan Liu; Haoyuan Chen; Yuanke Zhang; Jingyu Li (ITQM, 2022)

Hybrid Pre-training Based on Masked Autoencoders for Medical Image Segmentation. - Yufei Han; Haoyuan Chen; Pin Xu; Yanyi Li; Kuan Li; Jianping Yin (NCTCS, 2022)

A hierarchical conditional random field-based attention mechanism approach for gastric histopathology image classification. - Yixin Li; Xinran Wu; Chen Li 022; Xiaoyan Li; Haoyuan Chen; Changhao Sun; Md Mamunur Rahaman; Yudong Yao; Yong Zhang; Tao Jiang 014 (Appl. Intell., 2022)

IL-MCAM: An interactive learning and multi-channel attention mechanism-based weakly supervised colorectal histopathology image classification approach. - Haoyuan Chen; Chen Li 022; Xiaoyan Li; Md Mamunur Rahaman; Weiming Hu; Yixin Li; Wanli Liu; Changhao Sun; Hongzan Sun; Xinyu Huang 003; Marcin Grzegorzek (Comput. Biol. Medicine, 2022)

GasHisSDB: A new gastric histopathology image dataset for computer aided diagnosis of gastric cancer. - Weiming Hu; Chen Li 022; Xiaoyan Li; Md Mamunur Rahaman; Jiquan Ma; Yong Zhang; Haoyuan Chen; Wanli Liu; Changhao Sun; Yudong Yao; Hongzan Sun; Marcin Grzegorzek (Comput. Biol. Medicine, 2022)

Is the aspect ratio of cells important in deep learning? A robust comparison of deep learning methods for multi-scale cytopathology cell image classification: From convolutional neural networks to visual transformers. - Wanli Liu; Chen Li 022; Md Mamunur Rahaman; Tao Jiang 014; Hongzan Sun; Xiangchen Wu; Weiming Hu; Haoyuan Chen; Changhao Sun; Yudong Yao; Marcin Grzegorzek (Comput. Biol. Medicine, 2022)

EBHI: A New Enteroscope Biopsy Histopathological H&E Image Dataset for Image Classification Evaluation. - Weiming Hu; Chen Li 022; Xiaoyan Li; Md Mamunur Rahaman; Yong Zhang; Haoyuan Chen; Wanli Liu; Yudong Yao; Hongzan Sun; Ning Xu 012; Xinyu Huang 003; Marcin Grzegorzek (CoRR, 2022)

Application of Transfer Learning and Ensemble Learning in Image-level Classification for Breast Histopathology. - Yuchao Zheng; Chen Li 022; Xiaomin Zhou; Haoyuan Chen; Hao Xu 042; Yixin Li; Haiqing Zhang; Xiaoyan Li; Hongzan Sun; Xinyu Huang 003; Marcin Grzegorzek (CoRR, 2022)

Application of Graph Based Features in Computer Aided Diagnosis for Histopathological Image Classification of Gastric Cancer. - Haiqing Zhang; Chen Li 022; Shiliang Ai; Haoyuan Chen; Yuchao Zheng; Yixin Li; Xiaoyan Li; Hongzan Sun; Xinyu Huang 003; Marcin Grzegorzek (CoRR, 2022)

A Comparative Study of Gastric Histopathology Sub-size Image Classification: from Linear Regression to Visual Transformer. - Weiming Hu; Haoyuan Chen; Wanli Liu; Xiaoyan Li; Hongzan Sun; Xinyu Huang 003; Marcin Grzegorzek; Chen Li 022 (CoRR, 2022)

EBHI-Seg: A Novel Enteroscope Biopsy Histopathological Haematoxylin and Eosin Image Dataset for Image Segmentation Tasks. - Liyu Shi; Xiaoyan Li; Weiming Hu; Haoyuan Chen; Jing Chen; Zizhen Fan; Minghe Gao; Yujie Jing; Guotao Lu; Deguo Ma; Zhiyu Ma; Qingtao Meng; et al. (CoRR, 2022)

Kernel Packet: An Exact and Scalable Algorithm for Gaussian Process Regression with Matérn Correlations. - Haoyuan Chen; Liang Ding 003; Rui Tuo (J. Mach. Learn. Res., 2022)

Staged query graph generation based on answer type for question answering over knowledge base. - Haoyuan Chen; Fei Ye; Yuankai Fan; Zhenying He; Yinan Jing; Kai Zhang 006; X. Sean Wang (Knowl. Based Syst., 2022)

GasHis-Transformer: A multi-scale visual transformer approach for gastric histopathological image detection. - Haoyuan Chen; Chen Li 022; Ge Wang 001; Xiaoyan Li; Md Mamunur Rahaman; Hongzan Sun; Weiming Hu; Yixin Li; Wanli Liu; Changhao Sun; Shiliang Ai; Marcin Grzegorzek (Pattern Recognit., 2022)

CVM-Cervix: A hybrid cervical Pap-smear image classification framework using CNN, visual transformer and multilayer perceptron. - Wanli Liu; Chen Li 022; Ning Xu 012; Tao Jiang 014; Md Mamunur Rahaman; Hongzan Sun; Xiangchen Wu; Weiming Hu; Haoyuan Chen; Changhao Sun; Yudong Yao; Marcin Grzegorzek (Pattern Recognit., 2022)

HBC: Combining Lossy and Lossless Hybrid Bilayer Compression Framework on Time-Series Data. - Wanying Lu; Liang Liu 006; Wenbin Zhai; Haoyuan Chen; Yulei Liu (ISPA/BDCloud/SocialCom/SustainCom, 2023)

Predicting PD-L1 status of esophageal cancer from H&E images based on FusedNet model. - Minghe Gao; Chen Li 022; Jingyu Zhang; Haoyuan Chen; Weiming Hu; Hechen Yang; Liyu Shi; Yujie Jing; Shuaiyi Tian; Hongzan Sun; Marcin Grzegorzek; Xiaoyan Li (IEEE Big Data, 2023)

Coordinated Reconstruction Dual-Branch Network for Low-Dose PET Reconstruction. - Yanyi Li; Pin Xu; Haoyuan Chen; Yufei Han; Guojian Xiao; Kuan Li; Jianping Yin (NCTCS, 2023)

MS-UNet: Swin Transformer U-Net with Multi-scale Nested Decoder for Medical Image Segmentation with Small Training Data. - Haoyuan Chen; Yufei Han; Yanyi Li; Pin Xu; Kuan Li; Jianping Yin (PRCV (13), 2023)

Representing Additive Gaussian Processes by Sparse Matrices. - Lu Zou; Haoyuan Chen; Liang Ding 003 (CoRR, 2023)

MS-UNet-v2: Adaptive Denoising Method and Training Strategy for Medical Image Segmentation with Small Training Data. - Haoyuan Chen; Yufei Han; Pin Xu; Yanyi Li; Kuan Li; Jianping Yin (CoRR, 2023)

CAM-VT: A Weakly supervised cervical cancer nest image identification approach using conjugated attention mechanism and visual transformer. - Zizhen Fan; Xiangchen Wu; Changzhong Li; Haoyuan Chen; Wanli Liu; Yuchao Zheng; Jing Chen; Xiaoyan Li; Hongzan Sun; Tao Jiang 014; Marcin Grzegorzek; Chen Li 022 (Comput. Biol. Medicine, 2023)

OII-DS: A benchmark Oral Implant Image Dataset for object detection and image classification evaluation. - Qianqing Nie; Chen Li 022; Jinzhu Yang; Yudong Yao; Hongzan Sun; Tao Jiang 014; Marcin Grzegorzek; Ao Chen 001; Haoyuan Chen; Weiming Hu; Rui Li; Jiawei Zhang; et al. (Comput. Biol. Medicine, 2023)

MAT-VIT: A Vision Transformer with MAE-Based Self-Supervised Auxiliary Task for Medical Image Classification. - Yufei Han; Haoyuan Chen; Linwei Yao; Kuan Li; Jianping Yin (CSCWD, 2024)

Leveraging Sample Complementarity: A Novel Ensemble Strategy. - Pin Xu; Yanyi Li; Yufei Han; Haoyuan Chen; Kuan Li; Jianping Yin (IJCNN, 2024)

IRUM: An Image Representation and Unified Learning Method for Breast Cancer Diagnosis from Multi-View Ultrasound Images. - Haoyuan Chen; Yonghao Li; Jiadong Zhang; Qi Xu; Meiyu Li; Zhenhui Li; Xuejun Qian; Dinggang Shen (MLMI@MICCAI (1), 2024)

Aggregation Models with Optimal Weights for Distributed Gaussian Processes. - Haoyuan Chen; Rui Tuo (CoRR, 2024)

Enhancing educational Q&A systems using a Chaotic Fuzzy Logic-Augmented large language model. - Haoyuan Chen; Nuobei Shi; Ling Chen; Raymond Lee (Frontiers Artif. Intell., 2024)

Towards Robust Offline-to-Online Reinforcement Learning via Uncertainty and Smoothness. - Xiaoyu Wen; Xudong Yu; Rui Yang 010; Haoyuan Chen; Chenjia Bai; Zhen Wang 004 (J. Artif. Intell. Res., 2024)

AFC: An adaptive lossless floating-point compression algorithm in time series database. - Haoyuan Chen; Liang Liu 006; Jingwen Meng; Wanying Lu (Inf. Sci., 2024)

What can machine vision do for lymphatic histopathology image analysis: a comprehensive review. - Haoyuan Chen; Xiaoqi Li 007; Chen Li 022; Md Mamunur Rahaman; Xintong Li; Jian Wu 036; Hongzan Sun; Marcin Grzegorzek; Xiaoyan Li (Artif. Intell. Rev., 2024)

From Deep Additive Kernel Learning to Last-Layer Bayesian Neural Networks via Induced Prior Approximation. - Wenyuan Zhao; Haoyuan Chen; Tie Liu 002; Rui Tuo; Chao Tian 002 (AISTATS, 2025)

Improving one-dimensional-based environmental sound classification models with progressive projection knowledge distillation from two-dimensional-based models. - Huaxing Xu; Haoyuan Chen; Xudong Liu 004; Haichuan Ren (Eng. Appl. Artif. Intell., 2025)

Universal light SAM algorithm for in situ melting pool monitoring of L-DED/L-PBF/PAM processes. - Jiahong Chen; Hui Li 063; Shengnan Shen; Yingjie Wang; Rongzhe Ma; Haoyuan Chen; Hong Yin; Liwei Xia (J. Comput. Des. Eng., 2025)

Improving the Predictability of the Madden-Julian Oscillation at Subseasonal Scales with Gaussian Process Models. - Haoyuan Chen; Emil M. Constantinescu; Vishwas Rao; Cristiana Stan (CoRR, 2025)

Temporal consistent multi-view perception for robust embodied manipulation. - Haoyuan Chen; Rushuai Yang; Junjie Zhang; Xiaoyu Wen; Yi Chen; Dengxiu Yu; Chenjia Bai; Zhen Wang 004 (Pattern Recognit., 2026)