MassSorter: a tool for administrating and analyzing data from mass spectrometry experiments on proteins with known amino acid sequences. - Harald Barsnes; Svein-Ole Mikalsen; Ingvar Eidhammer (BMC Bioinform., 2006)

OLS Dialog: An open-source front end to the Ontology Lookup Service. - Harald Barsnes; Richard G. Côté; Ingvar Eidhammer; Lennart Martens (BMC Bioinform., 2010)

The Ontology Lookup Service: bigger and better. - Richard G. Côté; Florian Reisinger; Lennart Martens; Harald Barsnes; Juan Antonio Vizcaíno; Henning Hermjakob (Nucleic Acids Res., 2010)

The Proteomics Identifications database: 2010 update. - Juan Antonio Vizcaíno; Richard G. Côté; Florian Reisinger; Harald Barsnes; Joseph M. Foster; Jonathan Rameseder; Henning Hermjakob; Lennart Martens (Nucleic Acids Res., 2010)

compomics-utilities: an open-source Java library for computational proteomics. - Harald Barsnes; Marc Vaudel; Niklaas Colaert; Kenny Helsens; Albert Sickmann; Frode S. Berven; Lennart Martens (BMC Bioinform., 2011)

Computational and Statistical Methods for Protein Quantification by Mass Spectrometry. - Ingvar Eidhammer; Harald Barsnes; Geir Egil Eide; Lennart Martens (Wiley, 2013)

PeptideMapper: efficient and versatile amino acid sequence and tag mapping. - Dominik Kopczynski; Harald Barsnes; Pål R. Njølstad; Albert Sickmann; Marc Vaudel; Robert Ahrends (Bioinform., 2017)

BioContainers: an open-source and community-driven framework for software standardization. - Felipe da Veiga Leprevost; Björn A. Grüning; Saulo Aflitos; Hannes L. Röst; Julian Uszkoreit; Harald Barsnes; Marc Vaudel; Pablo A. Moreno; Laurent Gatto; Jonas Weber; Mingze Bai; Rafael C. Jiménez; et al. (Bioinform., 2017)

Extending protein interaction networks using proteoforms and small molecules. - Luis Francisco Hernández Sánchez; Bram Burger; Rodrigo Alexander Castro Campos; Stefan Johansson; Pål R. Njølstad; Harald Barsnes; Marc Vaudel (Bioinform., 2023)