PROGmiR: a tool for identifying prognostic miRNA biomarkers in multiple cancers using publicly available data. - Chirayu Pankaj Goswami; Harikrishna Nakshatri (J. Clin. Bioinform., 2012)

PROGgene: gene expression based survival analysis web application for multiple cancers. - Chirayu Pankaj Goswami; Harikrishna Nakshatri (J. Clin. Bioinform., 2013)

A spectrum graph-based protein sequence filtering algorithm for proteoform identification by top-down mass spectrometry. - Runmin Yang; Daming Zhu; Qiang Kou; Poornima Bhat-Nakshatri; Harikrishna Nakshatri; Si Wu; Xiaowen Liu (BIBM, 2017)

RareVar: A Framework for Detecting Low-Frequency Single-Nucleotide Variants. - Yangyang Hao; Xiaoling Xuei; Lang Li 001; Harikrishna Nakshatri; Howard J. Edenberg; Yunlong Liu (J. Comput. Biol., 2017)