EUKulele: Taxonomic annotation of the unsung eukaryotic microbes. - Arianna I. Krinos; Sarah K. Hu; Natalie R. Cohen; Harriet Alexander (J. Open Source Softw., 2021)

Reverse engineering environmental metatranscriptomes clarifies best practices for eukaryotic assembly. - Arianna I. Krinos; Natalie R. Cohen; Michael J. Follows; Harriet Alexander (BMC Bioinform., 2023)

Correction: Reverse engineering environmental metatranscriptomes clarifies best practices for eukaryotic assembly. - Arianna I. Krinos; Natalie R. Cohen; Michael J. Follows; Harriet Alexander (BMC Bioinform., 2023)

sourmash v4: A multitool to quickly search, compare, and analyze genomic and metagenomic data sets. - Luiz Irber; N. Tessa Pierce-Ward; Mohamed Abuelanin; Harriet Alexander; Abhishek Anant; Keya Barve; Colton Baumler; Olga B. Botvinnik; Phillip Brooks; Daniel Dsouza; Gautier Laurent; Mahmudur Rahman Hera; et al. (J. Open Source Softw., 2024)