ESTIMA, a tool for EST management in a multi-project environment. - Charu G. Kumar; Richard D. LeDuc; George Gong; Levan Roinishivili; Harris A. Lewin; Lei Liu (BMC Bioinform., 2004)

Reconstruction of metabolic pathways for the cattle genome. - Seongwon Seo; Harris A. Lewin (BMC Syst. Biol., 2009)

Reference-assisted chromosome assembly. - Jaebum Kim; Denis M. Larkin; Qingle Cai; Asan; Yongfen Zhang; Ri-Li Ge; Loretta Auvil; Boris Capitanu; Guojie Zhang; Harris A. Lewin; Jian Ma 004 (Proc. Natl. Acad. Sci. USA, 2013)

Synteny Explorer: An Interactive Visualization Application for Teaching Genome Evolution. - Chris Bryan; Gregory Guterman; Kwan-Liu Ma; Harris A. Lewin; Denis M. Larkin; Jaebum Kim; Jian Ma 004; Marta Farre (IEEE Trans. Vis. Comput. Graph., 2017)