Development of a polarizable force field for proteins via ab initio quantum chemistry: First generation model and gas phase tests. - George A. Kaminski; Harry A. Stern; Bruce J. Berne; Richard A. Friesner; Yixiang X. Cao; Robert B. Murphy; Ruhong Zhou; Thomas A. Halgren (J. Comput. Chem., 2002)

Simple algorithm for isothermal-isobaric molecular dynamics. - Harry A. Stern (J. Comput. Chem., 2004)

Evaluating Docking Methods for Prediction of Binding Affinities of Small Molecules to the G Protein βγ Subunits. - Min-Sun Park; Axel L. Dessal; Alan V. Smrcka; Harry A. Stern (J. Chem. Inf. Model., 2009)

Accelerating calculations of RNA secondary structure partition functions using GPUs. - Harry A. Stern; David H. Mathews (Algorithms Mol. Biol., 2013)

Antigenic cartography of H1N1 influenza viruses using sequence-based antigenic distance calculation. - Christopher S. Anderson; Patrick R. McCall; Harry A. Stern; Hongmei Yang; David J. Topham (BMC Bioinform., 2018)