HapIso: An Accurate Method for the Haplotype-Specific Isoforms Reconstruction from Long Single-Molecule Reads. - Serghei Mangul; Harry (Taegyun) Yang; Farhad Hormozdiari; Elizabeth Tseng; Alex Zelikovsky; Eleazar Eskin (ISBRA, 2016)

ROP: Dumpster Diving in RNA-sequencing to Find the Source of 1 Trillion Reads Across Diverse Adult Human Tissues. - Serghei Mangul; Harry (Taegyun) Yang; Noah Zaitlen (BCB, 2018)

Benchmarking of computational error-correction methods for next-generation sequencing data. - Keith Mitchell; Jaqueline J. Brito; Igor Mandric; Qiaozhen Wu; Sergey Knyazev; Sei Chang; Lana S. Martin; Aaron Karlsberg; Ekaterina Gerasimov; Russell Littman; Brian L. Hill; Nicholas C. Wu; et al. (BCB, 2020)