An alignment-free model for comparison of regulatory sequences. - Hashem Koohy; Nigel P. Dyer; John E. Reid; Georgy Koentges; Sascha Ott (Bioinform., 2010)

The rise and fall of machine learning methods in biomedical research. - Hashem Koohy (F1000Research, 2017)

Colonic epithelial cell diversity in health and inflammatory bowel disease. - Kaushal Parikh; Agne Antanaviciute; David Fawkner-Corbett; Marta Jagielowicz; Anna Aulicino; Christoffer Lagerholm; Simon Davis; James Kinchen; Hannah H. Chen 001; Nasullah Khalid Alham; Neil Ashley; Errin Johnson; et al. (Nat., 2019)

Evaluating performance of existing computational models in predicting CD8+ T cell pathogenic epitopes and cancer neoantigens. - Paul R. Buckley; Chloe H. Lee; Ruichong Ma; Isaac Woodhouse; Jeongmin Woo; Vasily Tsvetkov; Dmitrii S. Shcherbinin; Agne Antanaviciute; Mikhail Shughay; Margarida Rei; Alison Simmons; Hashem Koohy (Briefings Bioinform., 2022)