Accelerating Correlation Power Analysis Using Graphics Processing Units. - Hasindu Gamaarachchi; Roshan G. Ragel; Darshana Jayasinghe (CoRR, 2014)

The A to Z of building a testbed for Power Analysis attacks. - Hasindu Gamaarachchi; Harsha Ganegoda; Roshan G. Ragel (ICIIS, 2015)

Accelerating text-based plagiarism detection using GPUs. - M. A. C. Jiffriya; M. A. C. Akmal Jahan; Hasindu Gamaarachchi; Roshan G. Ragel (ICIIS, 2015)

Autonomic trust management in cloud-based and highly dynamic IoT applications. - Suneth Namal; Hasindu Gamaarachchi; Gyu Myoung Lee; Tai-Won Um (Kaleidoscope, 2015)

Power Analysis Based Side Channel Attack. - Hasindu Gamaarachchi; Harsha Ganegoda (CoRR, 2018)

SWARAM: Portable Energy and Cost Efficient Embedded System for Genomic Processing. - Ram Prasad Mohanty; Hasindu Gamaarachchi; Andrew J. Lambert; Sri Parameswaran (ACM Trans. Embed. Comput. Syst., 2019)

Seed-and-Vote based In-Memory Accelerator for DNA Read Mapping. - Ann Franchesca Laguna; Hasindu Gamaarachchi; Xunzhao Yin; Michael T. Niemier; Sri Parameswaran; Xiaobo Sharon Hu (ICCAD, 2020)

GPU accelerated adaptive banded event alignment for rapid comparative nanopore signal analysis. - Hasindu Gamaarachchi; Wai Chun Lam; Gihan Jayatilaka; Hiruna Samarakoon; Jared T. Simpson; Martin A. Smith; Sri Parameswaran (BMC Bioinform., 2020)

Cache Friendly Optimisation of de Bruijn Graph Based Local Re-Assembly in Variant Calling. - Hasindu Gamaarachchi; Arash Bayat; Bruno Gaëta; Sri Parameswaran (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

Computer Architecture-Aware Optimisation of DNA Analysis Systems. - Hasindu Gamaarachchi (2020)

Computer Architecture-Aware Optimisation of DNA Analysis Systems. - Hasindu Gamaarachchi (CoRR, 2021)

InterARTIC: an interactive web application for whole-genome nanopore sequencing analysis of SARS-CoV-2 and other viruses. - James M. Ferguson; Hasindu Gamaarachchi; Thanh Nguyen; Alyne Gollon; Stephanie Tong; Chiara Aquilina-Reid; Rachel Bowen-James; Ira W. Deveson (Bioinform., 2022)

Efficient Real-Time Selective Genome Sequencing on Resource-Constrained Devices. - Po Jui Shih; Hassaan Saadat; Sri Parameswaran; Hasindu Gamaarachchi (CoRR, 2022)

Invited: Algorithms and Architectures for Accelerating Long Read Sequence Analysis. - Hasindu Gamaarachchi; Kisaru Liyanage; Sri Parameswaran (DAC, 2023)

Cross Layer Design Using HW/SW Co-Design and HLS to Accelerate Chaining in Genomic Analysis. - Kisaru Liyanage; Hasindu Gamaarachchi; Roshan G. Ragel; Sri Parameswaran (IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2023)

ApproxTrain: Fast Simulation of Approximate Multipliers for DNN Training and Inference. - Jing Gong; Hassaan Saadat; Hasindu Gamaarachchi; Haris Javaid; Xiaobo Sharon Hu; Sri Parameswaran (IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 2023)

DeepSelectNet: deep neural network based selective sequencing for oxford nanopore sequencing. - Anjana Senanayake; Hasindu Gamaarachchi; Damayanthi Herath; Roshan G. Ragel (BMC Bioinform., 2023)

SEA: Sign-Separated Accumulation Scheme for Resource-Efficient DNN Accelerators. - Jing Gong; Hassaan Saadat; Haris Javaid; Hasindu Gamaarachchi; David Taubman; Sri Parameswaran (DATE, 2024)

Accelerating Chaining in Genomic Analysis Using RISC- V Custom Instructions. - Kisaru Liyanage; Hasindu Gamaarachchi; Hassaan Saadat; Tuo Li 001; Hiruna Samarakoon; Sri Parameswaran (DATE, 2024)