Construction of Multi-level Networks Incorporating Molecule, Cell, Organ and Phenotype Properties for Drug-induced Phenotype Prediction. - Jinmyung Jung; Hasun Yu; Seyeol Yoon; Mijin Kwon; Sungji Choo; Sangwoo Kim; Doheon Lee (DTMBIO@CIKM, 2014)

Systematic Identification of Context-dependent Conflicting Information in Biological Pathways. - Seyeol Yoon; Jinmyung Jung; Hasun Yu; Mijin Kwon; Sungji Choo; Kyunghyun Park; Dongjin Jang; Sangwoo Kim; Doheon Lee (DTMBIO@CIKM, 2014)

What-if Analysis in Biomedical Networks based on Production Rule System. - Hasun Yu; Jinmyung Jung; Doheon Lee; Sangwoo Kim (DTMBIO@CIKM, 2015)

Development of a Framework for Constructing a Virtual Physiological Human with the Integration of COntext Specific Directed Associations (CODA). - Hasun Yu; Jinmyung Jung; Seyeol Yoon; Mijin Kwon; Yeeok Kang; Sunghwa Bae; Doheon Lee (DTMBIO@CIKM, 2015)

Context-based resolution of semantic conflicts in biological pathways. - Seyeol Yoon; Jinmyung Jung; Hasun Yu; Mijin Kwon; Sungji Choo; Kyunghyun Park; Dongjin Jang; Sangwoo Kim; Doheon Lee (BMC Medical Informatics Decis. Mak., 2015)

Prediction of drugs having opposite effects on disease genes in a directed network. - Hasun Yu; Sungji Choo; Junseok Park; Jinmyung Jung; Yeeok Kang; Doheon Lee (BMC Syst. Biol., 2016)

Annotating activation/inhibition relationships to protein-protein interactions using gene ontology relations. - Soorin Yim; Hasun Yu; Dongjin Jang; Doheon Lee (BMC Syst. Biol., 2018)

Deconvoluting essential gene signatures for cancer growth from genomic expression in compound-treated cells. - Jinmyung Jung; Yeeok Kang; Hyojung Paik; Mijin Kwon; Hasun Yu; Doheon Lee (Bioinform., 2019)

ProtFIM: Fill-in-Middle Protein Sequence Design via Protein Language Models. - Youhan Lee; Hasun Yu (CoRR, 2023)

Solvent: A Framework for Protein Folding. - Jaemyung Lee 004; Kyeongtak Han; Jaehoon Kim; Hasun Yu; Youhan Lee (CoRR, 2023)

Pre-training Sequence, Structure, and Surface Features for Comprehensive Protein Representation Learning. - Youhan Lee; Hasun Yu; Jaemyung Lee 004; Jaehoon Kim (ICLR, 2024)