Clustering of eukaryotic orthologs based on sequence and Domain Similarities using the Markov Graph-Flow Algorithm. - Hatice Gulcin Ozer; Jingchun Chen; Fa Zhang 001; Bo Yuan (Advances in Bioinformatics and Its Applications, 2005)

Discovering biostructure constraints using VRML visualization. - William C. Ray; Hatice Gulcin Ozer (SIGGRAPH Posters, 2005)

MAVL/StickWRLD: analyzing structural constraints using interpositional dependencies in biomolecular sequence alignments. - Hatice Gulcin Ozer; William C. Ray (Nucleic Acids Res., 2006)

Informative Motifs in Protein Family Alignments. - Hatice Gulcin Ozer; William C. Ray (WABI, 2007)

Enabling Data Analysis on High-Throughput Data in Large Data Depository Using Web-Based Analysis Platform - A Case Study on Integrating QUEST with GenePattern in Epigenetics Research. - Terry Camerlengo; Hatice Gulcin Ozer; Pearlly Yan; Jeffrey D. Parvin; Tim Hui-Ming Huang; Kun Huang 001; Mingxiang Teng; Lang Li 001; Yunlong Liu; Francisco Perez; Tahsin M. Kurç (BIBM, 2009)

Clinical Attribute Network for Chronic Lymphocytic Leukemia. - Abhisek Kundu; Hatice Gulcin Ozer; Tara Borlawsky; Kristin C. Circle; Kun Huang 001; Philip R. O. Payne (BIBM, 2009)

A Comprehensive Analysis Workflow for Genome-Wide Screening Data from ChIP-Sequencing Experiments. - Hatice Gulcin Ozer; Doruk Bozdag; Terry Camerlengo; Jiejun Wu; Yi-Wen Huang; Timothy D. R. Hartley; Jeffrey D. Parvin; Tim Hui-Ming Huang; Ümit V. Çatalyürek; Kun Huang 001 (BICoB, 2009)

Using gene co-expression network analysis to predict biomarkers for chronic lymphocytic leukemia. - Jie Zhang 010; Yang Xiang; Liya Ding 001; Kristin Keen-Circle; Tara Borlawsky; Hatice Gulcin Ozer; Ruoming Jin; Philip R. O. Payne; Kun Huang 001 (BMC Bioinform., 2010)

Comparing Multiple Chip-Sequencing Experiments. - Hatice Gulcin Ozer; Yi-Wen Huang; Jiejun Wu; Jeffrey D. Parvin; Tim Hui-Ming Huang; Kun Huang 001 (J. Bioinform. Comput. Biol., 2011)

Removing Sequential Bottlenecks in Analysis of Next-Generation Sequencing Data. - Yi Wang; Gagan Agrawal; Hatice Gulcin Ozer; Kun Huang (IPDPS Workshops, 2014)

Scaling R Shiny Apps to Multiple Concurrent Users in a Secured HPC Environment Using Open OnDemand. - Eric Franz; Hatice Gulcin Ozer; Trey Dockendorf; Venkat Sundar Gadepalli; Amy Webb; Alan Chalker; Maciej Pietrzak; Morgan E. Rodgers; Douglas Johnson; David E. Hudak (PEARC, 2019)

BISR-RNAseq: an efficient and scalable RNAseq analysis workflow with interactive report generation. - Venkat Sundar Gadepalli; Hatice Gulcin Ozer; Ayse Selen Yilmaz; Maciej Pietrzak; Amy Webb (BMC Bioinform., 2019)

The Importance of Weakly Co-Evolving Residue Networks in Proteins is Revealed by Visual Analytics. - Sidharth Mohan; Hatice Gulcin Ozer; William C. Ray (Frontiers Bioinform., 2022)

SeedMatchR: identify off-target effects mediated by siRNA seed regions in RNA-seq experiments. - Tareian A. Cazares; Richard E. Higgs; Jibo Wang; Hatice Gulcin Ozer (Bioinform., 2024)