Qualitative Transition Systems for the Abstraction and Comparison of Transient Behavior in Parametrized Dynamic Models. - Hayssam Soueidan; Grégoire Sutre; Macha Nikolski (CMSB, 2009)

Discrete event modeling and analysis for systems biology models. - Hayssam Soueidan (2009)

Identification of conserved gene clusters in multiple genomes based on synteny and homology. - Anasua Sarkar; Hayssam Soueidan; Macha Nikolski (BMC Bioinform., 2011)

Flux Analysis of the Trypanosoma brucei Glycolysis Based on a Multiobjective-Criteria Bioinformatic Approach. - Amine Ghozlane; Frédéric Bringaud; Hayssam Soueidan; Isabelle Dutour; Fabien Jourdan; Patricia Thébault (Adv. Bioinformatics, 2012)

Finishing bacterial genome assemblies with Mix. - Hayssam Soueidan; Florence Maurier; Alexis Groppi; Pascal Sirand-Pugnet; Florence Tardy; Christine Citti; Virginie Dupuy; Macha Nikolski (BMC Bioinform., 2013)

Approximation Hardness of the Cross-Species Conserved Active Modules Detection Problem. - Thomas Hume; Hayssam Soueidan; Macha Nikolski; Guillaume Blin (SOFSEM, 2015)

xHeinz: an algorithm for mining cross-species network modules under a flexible conservation model. - Mohammed El-Kebir; Hayssam Soueidan; Thomas Hume; Daniela Beisser; Marcus T. Dittrich; Tobias Müller 001; Guillaume Blin; Jaap Heringa; Macha Nikolski; Lodewyk F. A. Wessels; Gunnar W. Klau (Bioinform., 2015)