LinearFold: linear-time approximate RNA folding by 5'-to-3' dynamic programming and beam search. - Liang Huang 001; He Zhang 025; Dezhong Deng; Kai Zhao 003; Kaibo Liu; David A. Hendrix; David H. Mathews (Bioinform., 2019)

LinearPartition: linear-time approximation of RNA folding partition function and base-pairing probabilities. - He Zhang 025; Liang Zhang; David H. Mathews; Liang Huang 001 (Bioinform., 2020)

Using Relative Lines of Code to Guide Automated Test Generation for Python. - Josie Holmes; Iftekhar Ahmed 001; Caius Brindescu; Rahul Gopinath; He Zhang 025; Alex Groce (ACM Trans. Softw. Eng. Methodol., 2020)

LinearTurboFold: Linear-time global prediction of conserved structures for RNA homologs with applications to SARS-CoV-2. - Sizhen Li; He Zhang 025; Liang Zhang; Kaibo Liu; Boxiang Liu; David H. Mathews; Liang Huang 001 (Proc. Natl. Acad. Sci. USA, 2021)

LinearAlifold: Linear-Time Consensus Structure Prediction for RNA Alignments. - Liang Zhang; Sizhen Li; He Zhang 025; David H. Mathews; Liang Huang 001 (CoRR, 2022)

LinearCoFold and LinearCoPartition: Linear-Time Algorithms for Secondary Structure Prediction of Interacting RNA molecules. - He Zhang 025; Sizhen Li; Liang Zhang; David H. Mathews; Liang Huang 001 (CoRR, 2022)

LinearSankoff: Linear-time Simultaneous Folding and Alignment of RNA Homologs. - Sizhen Li; Ning Dai; He Zhang 025; Apoorv Malik; David H. Mathews; Liang Huang 001 (CoRR, 2023)

Algorithm for optimized mRNA design improves stability and immunogenicity. - He Zhang 025; Liang Zhang; Ang Lin; Congcong Xu; Ziyu Li; Kaibo Liu; Boxiang Liu; Xiaopin Ma; Fanfan Zhao; Huiling Jiang; Chunxiu Chen; Haifa Shen; et al. (Nat., 2023)

LinearDesign software. - He Zhang 025; Liang Zhang; Ziyu Li; Kaibo Liu; Boxiang Liu; Liang Huang 001 (Zenodo, 2023)

LinearDesign. - He Zhang 025; Liang Zhang; Ziyu Li; Kaibo Liu; Boxiang Liu; Liang Huang 001 (Zenodo, 2023)