Effect of mutation on helper T-cells and viral population: A computer simulation model for HIV. - Rachel Mannion; Heather J. Ruskin; Ras B. Pandey (Theory Biosci., 2000)

A monte carlo approach to population dynamics of cells in a HIV immune response model. - Rachel Mannion; Heather J. Ruskin; Ras B. Pandey (Theory Biosci., 2000)

Virtual Phase Dynamics for Constrained Geometries in a Soap Froth. - Yu Feng 010; Heather J. Ruskin; Bao Zhu (International Conference on Computational Science (1), 2002)

A Mesoscopic Approach to Modeling Immunological Memory. - Yongle Liu; Heather J. Ruskin (International Conference on Computational Science (1), 2002)

Modeling Traffic Flow at an Urban Unsignalized Intersection. - Heather J. Ruskin; Ruili Wang (International Conference on Computational Science (1), 2002)

Effects of viral mutation on cellular dynamics in a monte carlo simulation of HIV immune response model in three dimensions. - Rachel Mannion; Heather J. Ruskin; Ras B. Pandey (Theory Biosci., 2002)

A Model of Immune Suppression and Repertoire Evolution. - John Burns 001; Heather J. Ruskin (International Conference on Computational Science, 2003)

Modelling Traffic Flow at a Multilane Intersection. - Ruili Wang; Heather J. Ruskin (ICCSA (1), 2003)

A Stochastic Model of the Effector T Cell Lifecycle. - John Burns 001; Heather J. Ruskin (ACRI, 2004)

Network Topology in Immune System Shape Space. - John Burns 001; Heather J. Ruskin (International Conference on Computational Science, 2004)

Multiple Parameterisation of Human Immune Response in HIV: Many-Cell Models. - Yu Feng 010; Heather J. Ruskin; Yongle Liu (ICCSA (3), 2004)

A Sequence-Focused Parallelisation of EMBOSS on a Cluster of Workstations. - Karl Podesta; Martin Crane; Heather J. Ruskin (ICCSA (3), 2004)

Diversity emergence and dynamics during primary immune response: a shape space, physical space model. - John Burns 001; Heather J. Ruskin (Theory Biosci., 2004)

Network Emergence in Immune System Shape Space. - Heather J. Ruskin; John Burns 001 (ICCSA (2), 2005)

Simulation of Heterogeneous Motorised Traffic at a Signalised Intersection. - Puspita Deo; Heather J. Ruskin (ACRI, 2006)

Comparison of Homogeneous and Heterogeneous Motorised Traffic at Signalised and Two-Way Stop Control Single Lane Intersection. - Puspita Deo; Heather J. Ruskin (ICCSA (1), 2006)

An Agent-Based Approach to Immune Modelling. - Dimitri Perrin; Heather J. Ruskin; John Burns 001; Martin Crane (ICCSA (1), 2006)

Probabilistic models for drug dissolution. Part 1. Review of Monte Carlo and stochastic cellular automata approaches. - Ana Barat; Heather J. Ruskin; Martin Crane (Simul. Model. Pract. Theory, 2006)

Probabilistic methods for drug dissolution. Part 2. Modelling a soluble binary drug delivery system dissolving in vitro. - Ana Barat; Heather J. Ruskin; Martin Crane (Simul. Model. Pract. Theory, 2006)

Optimisation and parallelisation strategies for Monte Carlo simulation of HIV infection. - D. Hecquet; Heather J. Ruskin; Martin Crane (Comput. Biol. Medicine, 2007)

Performance Evaluation of Traffic at Urban Single-Lane Junctions and Roundabouts. - Puspita Deo; Heather J. Ruskin (ERCIM News, 2007)

The importance of boundary conditions in the simulation of dissolution in the USP dissolution apparatus. - Niall M. McMahon; Martin Crane; Heather J. Ruskin; L. Crane (Simul. Model. Pract. Theory, 2007)

Response to the comments by Bernaschi et al. on 'Optimisation and parallelisation strategies for Monte Carlo simulation of HIV infection'. - D. Hecquet; Heather J. Ruskin; Martin Crane (Comput. Biol. Medicine, 2008)

Techniques for clustering gene expression data. - Grainne Kerr; Heather J. Ruskin; Martin Crane; Padraig Doolan (Comput. Biol. Medicine, 2008)

Epigenetic Modelling. - Dimitri Perrin; Heather J. Ruskin; Martin Crane; Ray Walshe (ERCIM News, 2008)

Novel Database for Genetic and Epigenetic Mechanisms in Colon Cancer. - Heather J. Ruskin; Ana Barat; Ludmila Sarbu (ERCIM News, 2008)

3D Multi-agent models for protein release from PLGA spherical particles with complex inner morphologies. - Ana Barat; Heather J. Ruskin; Martin Crane (Theory Biosci., 2008)

From Bio-inspired Computing to E-Biology. - Dimitri Perrin; Heather J. Ruskin (C5, 2009)

Considerations for a Social and Geographical Framework for Agent-Based Epidemics. - Benoit Claude; Dimitri Perrin; Heather J. Ruskin (CASoN, 2009)

Visualization of Complex Biological Systems: An Immune Response Model Using OpenGL. - John Burns 001; Heather J. Ruskin; Dimitri Perrin; John Walsh (Complex (1), 2009)

Multiscaled Cross-Correlation Dynamics in Financial Time-Series. - Thomas Conlon; Heather J. Ruskin; Martin Crane (Adv. Complex Syst., 2009)

Seizure characterisation using frequency-dependent multivariate dynamics. - Thomas Conlon; Heather J. Ruskin; Martin Crane (Comput. Biol. Medicine, 2009)

Edge-Weighting of Gene Expression Graphs. - Grainne Kerr; Dimitri Perrin; Heather J. Ruskin; Martin Crane (Adv. Complex Syst., 2010)

Comparison of evolutionary algorithms in gene regulatory network model inference. - Alina Sîrbu; Heather J. Ruskin; Martin Crane (BMC Bioinform., 2010)

Drug Dissolution Modelling. - Niall M. McMahon; Martin Crane; Heather J. Ruskin (ERCIM News, 2010)

Modelling Gene Regulatory Networks - An Integrative Approach. - Alina Sîrbu; Heather J. Ruskin; Martin Crane (ERCIM News, 2010)

A Discrete Flow Simulation Model for Urban Road Networks, with Application to Combined Car and Single-File Bicycle Traffic. - Jelena Vasic; Heather J. Ruskin (ICCSA (1), 2011)

A Discrete Simulation Model for Traffic Including Bicycles on Urban Networks, Applied to Intersection of Two One-Way Streets. - Jelena Vasic; Heather J. Ruskin (PPAM (2), 2011)

Automatically Detecting "Significant Events" on SenseCam™. - Na Li; Martin Crane; Heather J. Ruskin (ERCIM News, 2011)

A Cellular Automata-Based Network Model for Heterogeneous Traffic: Intersections, Turns and Their Connection. - Jelena Vasic; Heather J. Ruskin (ACRI, 2012)

A computational model for genetic and epigenetic signals in colon cancer. - Irina A. Roznovat; Heather J. Ruskin (BIBM Workshops, 2012)

High-Performance Computing for Data Analytics. - Dimitri Perrin; Marija Bezbradica; Martin Crane; Heather J. Ruskin; Christophe Duhamel (DS-RT, 2012)

Visual Experience for Recognising Human Activities. - Na Li; Martin Crane; Heather J. Ruskin (EvAAL, 2012)

Parallelisation strategies for large scale cellular automata frameworks in pharmaceutical modelling. - Marija Bezbradica; Martin Crane; Heather J. Ruskin (HPCS, 2012)

Microarrays - Innovative Standards in a Changing World: the Case for Cloud. - Jane Kernan; Heather J. Ruskin (ERCIM News, 2012)

Agent-based Space-time Discrete Simulation of Urban Traffic Including Bicycles. - Jelena Vasic; Heather J. Ruskin (ANT/MobiWIS, 2012)

Integrating heterogeneous gene expression data for gene regulatory network modelling. - Alina Sîrbu; Heather J. Ruskin; Martin Crane (Theory Biosci., 2012)

Application of statistical physics for the identification of important events in visual lifelogs. - Na Li; Martin Crane; Heather J. Ruskin; Cathal Gurrin (BIBM, 2013)

Methylation Inhibitors and Carcinogens in an Agent-Based Model for Colon Crypt Dynamics during Cancer Development. - Irina A. Roznovat; Heather J. Ruskin (EMS, 2013)

Multiscaled Cross-Correlation Dynamics on SenseCam Lifelogged Images. - Na Li; Martin Crane; Heather J. Ruskin; Cathal Gurrin (MMM (1), 2013)

Probabilistic Pharmaceutical Modelling: A Comparison Between Synchronous and Asynchronous Cellular Automata. - Marija Bezbradica; Heather J. Ruskin; Martin Crane (PPAM (2), 2013)

Applying Random Matrix Theory Filters on SenseCam Images. - Na Li; Martin Crane; Cathal Gurrin; Heather J. Ruskin (ERCIM News, 2013)

Interdependencies of Genetic and Epigenetic Events in a Computational Model for Colon Cancer Dynamics. - Irina-Afrodita Roznovat; Heather J. Ruskin (ERCIM News, 2013)

Automatically Detecting "Significant Events" on SenseCam. - Na Li; Martin Crane; Heather J. Ruskin (Int. J. Wavelets Multiresolution Inf. Process., 2013)

LogisticCrypt - A logistic model of intestinal crypt structure. - Irina A. Roznovat; Heather J. Ruskin (BIBM, 2014)

A computational analysis on methylation inhibition during intestinal cancer initiation. - Irina A. Roznovat; Heather J. Ruskin (BIBM, 2014)

Building cross-scale models of epigenetic mechanisms. - Heather J. Ruskin; Dimitri Perrin; Irina A. Roznovat (BIBM, 2014)

EGIA - Evolutionary Optimisation of Gene Regulatory Networks, an Integrative Approach. - Alina Sîrbu; Martin Crane; Heather J. Ruskin (CompleNet, 2014)

Modelling Impact of Morphological Urban Structure and Cognitive Behaviour on Pedestrian Flows. - Marija Bezbradica; Heather J. Ruskin (ICCSA (4), 2014)

Random Matrix Ensembles of Time Correlation Matrices to Analyze Visual Lifelogs. - Na Li; Martin Crane; Heather J. Ruskin; Cathal Gurrin (MMM (1), 2014)

Comparative analysis of asynchronous cellular automata in stochastic pharmaceutical modelling. - Marija Bezbradica; Heather J. Ruskin; Martin Crane (J. Comput. Sci., 2014)

Finding Motifs in Large Personal Lifelogs. - Na Li; Martin Crane; Cathal Gurrin; Heather J. Ruskin (AH, 2016)

NTCIR-12 Lifelog Data Analytics. - Na Li; Cathal Gurrin; Martin Crane; Heather J. Ruskin (LTA@MM, 2016)

Applications of High Performance Algorithms to Large Scale Cellular Automata Frameworks Used in Pharmaceutical Modelling. - Marija Bezbradica; Martin Crane; Heather J. Ruskin (J. Cell. Autom., 2016)

A Computational Lymph Tissue Model for Long Term HIV Infection Progression and Immune Fitness. - Andreas Hillmann; Martin Crane; Heather J. Ruskin (AICS, 2017)

EpiGeNet: A Graph Database of Interdependencies Between Genetic and Epigenetic Events in Colorectal Cancer. - Irina Balaur; Mansoor A. S. Saqi; Ana Barat; Artem Lysenko; Alexander Mazein; Christopher J. Rawlings; Heather J. Ruskin; Charles Auffray (J. Comput. Biol., 2017)

Financial Time Series: Motif Discovery and Analysis Using VALMOD. - Eoin Cartwright; Martin Crane; Heather J. Ruskin (ICCS (5), 2019)

Efficient Computational Models for assessment of Spatial Infection Features. - Andreas Hillmann; Martin Crane; Heather J. Ruskin (HPCS, 2019)

Improving Confidence in Simulations through the Application of Multiple Updating Strategies. - Joseph Kehoe; Martin Crane; Heather J. Ruskin (HPCS, 2019)