g: Profiler - a web-based toolset for functional profiling of gene lists from large-scale experiments. - Jüri Reimand; Meelis Kull; Hedi Peterson; Jaanus Hansen; Jaak Vilo (Nucleic Acids Res., 2007)

KEGGanim: pathway animations for high-throughput data. - Priit Adler; Jüri Reimand; Jürgen Jänes; Raivo Kolde; Hedi Peterson; Jaak Vilo (Bioinform., 2008)

GraphWeb: mining heterogeneous biological networks for gene modules with functional significance. - Jüri Reimand; Laur Tooming; Hedi Peterson; Priit Adler; Jaak Vilo (Nucleic Acids Res., 2008)

VisHiC - hierarchical functional enrichment analysis of microarray data. - Darya Krushevskaya; Hedi Peterson; Jüri Reimand; Meelis Kull; Jaak Vilo (Nucleic Acids Res., 2009)

Tools and data services registry: a community effort to document bioinformatics resources. - Jon C. Ison; Kristoffer Rapacki; Hervé Ménager; Matús Kalas; Emil Rydza; Piotr Chmura; Christian Anthon; Niall Beard; Karel Berka; Dan M. Bolser; Tim Booth; Anthony Bretaudeau; et al. (Nucleic Acids Res., 2016)

g: Profiler - a web server for functional interpretation of gene lists (2016 update). - Jüri Reimand; Tambet Arak; Priit Adler; Liis Kolberg; Sulev Reisberg; Hedi Peterson; Jaak Vilo (Nucleic Acids Res., 2016)

Using bio.tools to generate and annotate workbench tool descriptions. - Kenzo-Hugo Hillion; Ivan Kuzmin; Anton Khodak; Eric Rasche; Michael R. Crusoe; Hedi Peterson; Jon C. Ison; Hervé Ménager (F1000Research, 2017)

C-reactive protein upregulates the whole blood expression of CD59 - an integrative analysis. - Kaido Lepik; Tarmo Annilo; Viktorija Kukuskina; eQTLGen Consortium; Kai Kisand; Zoltán Kutalik; Pärt Peterson; Hedi Peterson (PLoS Comput. Biol., 2017)

g: Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update). - Uku Raudvere; Liis Kolberg; Ivan Kuzmin; Tambet Arak; Priit Adler; Hedi Peterson; Jaak Vilo (Nucleic Acids Res., 2019)

PAWER: protein array web exploreR. - Dmytro Fishman; Ivan Kuzmin; Priit Adler; Jaak Vilo; Hedi Peterson (BMC Bioinform., 2020)

gprofiler2 - an R package for gene list functional enrichment analysis and namespace conversion toolset g:Profiler. - Liis Kolberg; Uku Raudvere; Ivan Kuzmin; Jaak Vilo; Hedi Peterson (F1000Research, 2020)

A framework to assess the quality and impact of bioinformatics training across ELIXIR. - Kim T. Gurwitz; Prakash Singh Gaur; Louisa J. Bellis; Lee D. Larcombe; Eva Alloza; Balint Laszlo Balint; Alexander Botzki; Jure Dimec; Victoria Dominguez Del Angel; Pedro L. Fernandes; Eija Korpelainen; Roland Krause; et al. (PLoS Comput. Biol., 2020)

g:Profiler - interoperable web service for functional enrichment analysis and gene identifier mapping (2023 update). - Liis Kolberg; Uku Raudvere; Ivan Kuzmin; Priit Adler; Jaak Vilo; Hedi Peterson (Nucleic Acids Res., 2023)