HTqPCR: high-throughput analysis and visualization of quantitative real-time PCR data in R. - Heidi Dvinge; Paul Bertone (Bioinform., 2009)

PeakAnalyzer: Genome-wide annotation of chromatin binding and modification loci. - Mali Salmon-Divon; Heidi Dvinge; Kairi Tammoja; Paul Bertone (BMC Bioinform., 2010)