Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes. - Heidi J. Sofia; Valerie Burland; Donna L. Daniels; Guy Plunkett III; Frederick R. Blattner (Nucleic Acids Res., 1994)

A Symbolic Logic Strategy For Mapping Biological Concepts in the HERBE Prototype. - Eric G. Stephan; George Chin Jr.; Kyle R. Klicker; Abigail L. Corrigan; Heidi J. Sofia (CSB, 2003)

Exploring Genomic Context Patterns for Rhodobacter Sphaeroides in the HERBE Knowledge Discovery Environment. - Heidi J. Sofia; Abigail L. Corrigan; Kyle R. Klicker; George Chin Jr.; Eric G. Stephan (CSB, 2004)

Synchronized Biological Knowledge and Data Management: A Hybrid Approach. - Eric G. Stephan; George Chin Jr.; Abigail L. Corrigan; Kyle R. Klicker; Heidi J. Sofia (METMBS, 2004)

Supporting Computational Visual Theories in Biology. - George Chin Jr.; Eric G. Stephan; Kyle R. Klicker; Abigail L. Corrigan; Heidi J. Sofia (VL/HCC, 2004)

Problem Solving Environment Approach to Integrating Diverse Biological Data Sources. - Eric G. Stephan; Kyle R. Klicker; Mudita Singhal; Heidi J. Sofia (CSB Workshops, 2005)

Graph Mining of Networks from Genome Biology. - George Chin Jr.; Grant C. Nakamura; Daniel G. Chavarría-Miranda; Heidi J. Sofia (BIBE, 2007)

A High-Performance Computational Framework for Bionetwork Analysis. - George Chin Jr.; Daniel G. Chavarría-Miranda; Grant C. Nakamura; Heidi J. Sofia (IMSCCS, 2007)

BioGraphE: high-performance bionetwork analysis using the Biological Graph Environment. - George Chin Jr.; Daniel G. Chavarría-Miranda; Grant C. Nakamura; Heidi J. Sofia (BMC Bioinform., 2008)

A dynamic multiscale magnifying tool for exploring large sparse graphs. - Pak Chung Wong; Harlan Foote; Patrick Mackey; George Chin Jr.; Heidi J. Sofia; James J. Thomas (Inf. Vis., 2008)

FAVOR: functional annotation of variants online resource and annotator for variation across the human genome. - Hufeng Zhou; Theodore Arapoglou; Xihao Li; Zilin Li; Xiuwen Zheng 001; Jill Moore; Abhijith Asok; Sushant Kumar; Elizabeth E. Blue; Steven Buyske; Nancy J. Cox; Adam Felsenfeld; et al. (Nucleic Acids Res., 2023)